Caldicellulosiruptor hydrothermalis: Calhy_1052
Help
Entry
Calhy_1052 CDS
T01346
Name
(GenBank) Xylose isomerase domain protein TIM barrel
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Calhy_1052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_1052
Enzymes [BR:
chd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Calhy_1052
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Calhy_1052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Amidohydro_1
Motif
Other DBs
NCBI-ProteinID:
ADQ06779
UniProt:
E4Q863
LinkDB
All DBs
Position
1072644..1073504
Genome browser
AA seq
286 aa
AA seq
DB search
MIRFGPAGNSQSFYDAGYKSSVDAPKWLKSIGLSAYEYQCNKGVNISKEKARQIGQEAQK
YDILVSIHAPYYINFGSQEEEKLQKSKEYIYECVEVAKEMKAQRIVFHPGSCAKVDRSLA
FETAKKAILEVVNVVKEMHADGIFLCPETMGKKNNLGSSDEIIEICKMDEMLLPTIDFGH
INAFEGGSLKTEEDFENLLKKFIDQLGYERMKYFHSHFSRIEYTSQGEKKHWNYEDKQFE
PDFEPLAEALYKLKLEPVIICESKDYMAEDALVLKKIYQETLEKRV
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgataagatttggtcctgcaggaaactctcagagtttttacgatgctggttataaatcg
agcgttgatgcgccaaagtggctaaaatcaataggtctttctgcttatgagtaccagtgt
aacaaaggggtgaacatttcaaaagaaaaggcaagacagattggtcaggaagcgcaaaag
tatgatatacttgtctccatccacgcaccttactatataaactttggaagccaggaagaa
gaaaagttgcaaaagtcaaaagagtacatctatgaatgcgtagaagttgcaaaggagatg
aaagcgcaaaggattgtgttccaccccggttcatgcgcaaaggtagatagaagcttggct
tttgaaacagcaaaaaaggcaatattggaagttgtaaacgtggtaaaagaaatgcatgca
gatgggattttcttgtgcccggaaacaatgggcaaaaaaaacaatcttggcagtagcgat
gagataatagagatttgcaaaatggacgagatgctgcttccaaccattgattttgggcac
ataaatgctttcgaaggcggcagcttaaagacagaagaggattttgaaaatttactcaag
aaatttattgaccagcttggatatgaaaggatgaaatactttcacagccattttagcagg
atagaatacacatcacaaggtgaaaaaaaacactggaactatgaagacaaacagtttgag
cctgactttgaaccactggcagaggctctttacaagctaaagcttgaacctgtgataatc
tgtgaatcaaaagactatatggcagaggatgctcttgttctgaaaaagatctatcaagaa
actttagaaaaaagggtgtga
DBGET
integrated database retrieval system
