Caldicellulosiruptor hydrothermalis: Calhy_1298
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Entry
Calhy_1298 CDS
T01346
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calhy_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_1298
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Calhy_1298
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Calhy_1298
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Kinesin
Microtub_bd
Flavi_DEAD
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADQ07017
UniProt:
E4QA45
LinkDB
All DBs
Position
1330687..1332672
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AA seq
661 aa
AA seq
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MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL
VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK
LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQY
ERNDVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHV
AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG
FCKGIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDAL
VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSRIVEQIIRPTGLVDPE
IEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDIDT
IERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARNVYGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATVS
VAEEEEKYEVVEKDIVENMTKEEIEEYIKELEQEMKKHAIELEFEKAAKIRDKIFELKKL
L
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatttaagcttgtttcagactttaaaccaactggcgaccagccaaaagcaatt
gagatgttaacagaaggaattttaaaaggtgaaaaatttcagacccttttaggtgttacc
gggtcgggcaagacatttacaatggcaaaggtcatagagaatgttcaaagacctacactt
gtcttggcacataacaaaactttagcagcacagctttgtagtgagtttagagaatttttc
ccagaaaatgcagtggaattctttgtgagttattatgactattatcagcctgaagcttat
atcccggagactgacacatatattgaaaaagattcgtctataaatgaagagattgacaag
ctgagacattcagctacatctgccttatttgaaagaagagatgttataattgttgcaagt
gtatcctgtatttacagtttgggtagtcctgaagattatttaaatcttactatttctttg
cgccctggcatgacaaaagacagagatgaggtcataagagaacttataagaatgcagtat
gaaagaaatgatgttgactttcgaagaggcagatttagagtaagaggggacgtacttgaa
gttttccctgcttctaatacggacagggcgataagaatagaatttttcggagatgaaata
gagaggattacagaatttgatgttgtgacaggtgaggtaattgggcgaaggaaccatgtt
gcaatatttccagcatctcactatgtaacaacagcagagaagttgaaaagagcgataaaa
agtatagaagaagaacttgaacaaaggctaaaagagctaagaagtatggggaagcttgtt
gaagctcagaggcttgaacagagaacgcgctatgacatagagatgcttcaggaaatgggt
ttttgtaaagggatagagaactactcaaggcacttaactggcaggccaccaggaagtcca
ccgtataccctacttgattattttccgaaggatttcataatgttcattgacgagtcacat
gttactatacctcaagtaagagctatgtacaatggtgacaaagcaagaaaagatgctctt
gttgaatatggttttagacttccatcagcatacgacaacagaccattgacattcgaagaa
ttcgaagagaagctaaatcaagtgatttttgtaagtgcaacacccgggccgtatgaactc
aaaaaatcttcacgcattgttgaacaaattataagaccgacaggacttgttgaccctgaa
attgaggttcatcctgtacaaggtcagattgaccatctgattggcgagatacgaaagcga
gtggaaaagaaccagagagttcttgttactacccttaccaaaaagatggctgaaagcctt
actgactatttaaaagatgtgggaatcagggtccgatatatgcattcagacatagacaca
attgagcgtatgcagattatcagagatttacggcttggcaagtttgatgtgctggtaggg
ataaatctgctcagagaaggacttgaccttcccgaggtgtcacttgttgcaattttggat
gcagacaaagaaggttttttgaggtcagagacttcgcttatccagacaattggacgtgct
gcaagaaatgtttatggaaaggttataatgtatgcagatagaatcacaaacgctatgcaa
agagccattgatgagacaaaccgacgtaggaaaatccagatagaatacaatcagaaacat
ggcattgtacctcaaactgtaagaaaaggtataagacagataattgaagcgacagtgtct
gtggctgaagaggaagagaaatatgaagttgtggagaaagacattgtagaaaatatgaca
aaggaagagatagaagaatatatcaaggaacttgaacaggagatgaaaaagcatgctatt
gaacttgaatttgagaaggctgcaaaaataagggacaaaatatttgaactcaaaaaactt
ctttaa
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