Caldicellulosiruptor hydrothermalis: Calhy_1673
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Entry
Calhy_1673 CDS
T01346
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calhy_1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chd03021
]
Calhy_1673
03019 Messenger RNA biogenesis [BR:
chd03019
]
Calhy_1673
Transcription machinery [BR:
chd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Calhy_1673
Messenger RNA biogenesis [BR:
chd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Calhy_1673
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
TEP1_CUB2
AAA_22
AAA_24
Nuc_rec_co-act
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
ADQ07388
UniProt:
E4QC96
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All DBs
Position
complement(1703466..1705136)
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AA seq
556 aa
AA seq
DB search
MPGSLDEFLKGKSIIELREIAKSLGIQKYSLLKKGELMEAIKNFLGSSEEDATVLEGIGK
KEKGRRGRKKKSETAEVQQTFELKSEEQESKLEETEEKEEAKPSEMENKEEDNIKEQSLS
EHIQKEEEKTEMPTDVSLNEEKKEESKVIELKPKKEEKREDKMQIEIPPELKELEGKVEI
GGIGEGVLEIIYEPGGGGGYGFLRDDSFVPGPNDIYVSPSQIRKFNLKTGDKIRGPIRLP
KENEKFAGLLYVQSVNDMKPEEVAKRTPFEDLTPIFPNKRIILENKNEPKDLAVRLIDLI
APIGRGQRGLIVAPPKAGKTTLLKKIANSILTNYDDLHLIVLLIDERPEEVTDMQDSIKA
EIHYSTFDETPEHHIKVAEMVLERAMRLVECKRDVVILLDSLTRLARAYNLVEPPSGRTL
SGGLDPNALHKPKKFFGAARNLKEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHL
DRKLSEKRIFPAIDINKSGTRREELLLSEEEKAAVDAIRRALSNFGTAETTERIISMLSQ
TKSNEEFIRKILQNLR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgggtcacttgatgagtttttaaagggaaagtctattattgaacttagagaaata
gcaaaaagtctgggtattcaaaaatattctctgctcaaaaaaggtgaattgatggaagct
attaaaaattttctgggaagttcggaagaagatgcgacagttcttgagggcataggtaaa
aaagaaaaaggtagaagaggaagaaagaagaaatcagaaactgcagaagttcagcagact
tttgaattaaagagcgaggagcaagaatcaaagcttgaagagactgaagagaaggaagag
gcaaaaccaagtgaaatggaaaataaagaagaagataacataaaagagcagtctttgtcg
gagcacatacaaaaagaagaagaaaaaactgaaatgccaacagatgttagtttgaatgag
gagaaaaaagaagagagtaaagtaatagagttaaaacctaaaaaagaagaaaaaagagag
gataagatgcagatagaaattccaccagaattgaaagaacttgaaggtaaagtggagata
ggcggtataggagaaggagttttggagataatttatgagcctggtggcggtggcggttac
ggatttttgcgcgatgattcgtttgttcctggccccaacgacatatatgtttcgccatct
caaatcagaaaattcaatctcaaaaccggagataaaattagaggtcccattagacttcca
aaagaaaatgagaagtttgcaggacttttgtatgttcagagcgtcaacgatatgaaacca
gaagaagttgcaaaacgcactccttttgaagaccttacccctattttcccaaacaaaaga
ataattttggaaaataaaaatgagcctaaggatttagcggtaagactcatagaccttatt
gcgccaattggaagaggccagagaggattaattgtagcaccaccaaaagcaggtaaaact
acactattaaagaagatagcaaatagtattctgacaaactatgatgatttgcatttgatt
gtactgctcatcgatgaaagacctgaagaggtcactgatatgcaagactcaataaaagca
gagatacattactcaacatttgatgaaactccggaacaccacataaaagttgctgaaatg
gttttagaaagggctatgagacttgttgagtgtaaaagagatgttgtcatattgctggat
agtttgacaaggcttgcacgtgcttataacttggttgaaccaccttctggcagaacactt
tctggcggtcttgacccgaacgctcttcacaaacctaaaaagttttttggtgctgcaaga
aaccttaaagaaggtggtagtcttactatccttgcaacagcattgattgaaacagggtca
cgaatggatgatgttatatttgaagagttcaagggtactggcaacatggagttgcacctt
gacagaaaactttctgaaaaacgaatattcccagctattgatataaacaagtcagggacg
cgaagagaagaacttttgctgtctgaagaagaaaaagcagctgttgatgctatcagaaga
gcactttctaactttggaacagcagaaaccacagagagaattataagtatgctttcccaa
acaaagtcaaatgaagaatttataagaaaaatattacaaaatttaagataa
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