Caldicellulosiruptor hydrothermalis: Calhy_1679
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Entry
Calhy_1679 CDS
T01346
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calhy_1679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chd03019
]
Calhy_1679
03016 Transfer RNA biogenesis [BR:
chd03016
]
Calhy_1679
Enzymes [BR:
chd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Calhy_1679
Messenger RNA biogenesis [BR:
chd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Calhy_1679
Transfer RNA biogenesis [BR:
chd03016
]
Prokaryotic type
tRNA degradation factors
Calhy_1679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
SPATA25
Motif
Other DBs
NCBI-ProteinID:
ADQ07394
UniProt:
E4QCA2
LinkDB
All DBs
Position
complement(1710734..1712839)
Genome browser
AA seq
701 aa
AA seq
DB search
MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTV
DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD
PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG
TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPEE
IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETEETLLLVDDALYNLEK
EIVRKMVAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEM
QFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEFP
YTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDI
QGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAREARLKILDFMQTVI
DKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAPD
DISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLKS
VDEVVKVGDLVLVKVIGIDKLGRLSLSRKEALNVTYSRKAK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
ttggagagtaaaatttataaaatggaacttgctggaagagagctcagctttgagattgga
aaatacgctcttttggcaaacggggctgtgcttgcaagatatggtgacacagctgtgctt
gtcactgcatgtgcttctgaaaagcccagaaaaggtataaactttttccctcttacagtt
gactatgaagagaggctgtactctgttggtaaaattccaggtggatttataaaaagagaa
ggtaaaccgtccgagaaagcaattctttctgcaaggctaatagacagacctataagaccg
cttttcccaaaggatttttatcatgatgtctctgttatagctacagtactgtcagttgac
cctgacaatccaccggatgttctcgcaatgcttggttcatctgttgcactgtcaatctct
gatataccatttgaaggaccgactggttctgtgcttgtcgggtatgtggatggtaaaatt
gtcataaaccctacggctaaggaaagagaagtgagcaaacttcatcttgttgtgtcgggg
acaaaagacagggtgatgatgatagaagctggtgcgaaagaagttcctgaagatataatg
cttgaggctatcatgacagcacaggaagagataaagaagattgttgagttcatagaagga
atagtaagagaagttggaaaacctaagatggaatatcaaaagaggattgtgcctgaagag
ataaaacaaaaggtacgtgagattgcatatgacaaggtttatcagtatgtgcagataccc
gacaagattgagagggataagaagcttgatgagctcaaagaagaagtgttcaaggctttc
gaaggtgagacagaagaaactcttttacttgtggatgatgcgctttataaccttgaaaaa
gagattgtcagaaagatggttgcagaggaaggaaaacgccctgatggcagaaaatttgac
gagataagacctctttatgctgaggttggtattttgccaagaacacatggttctgcgctg
ttcaaaagaggttacactcaggttttgacagttgcaactcttggtacaaaaggtgagatg
cagtttttagacggtcttgaagaagaagaggcaaaaaggtatatgcatcattataacttc
ccaccattttctacaggtgaatcaaaacctgtaagaggtccgggaagaagagagatagga
catggggcattagctgaaagggcacttgaacctgtcattccttcggaagatgaattccct
tacaccattcgacttgtatctgaagttttgacatctaacggttcaacgtcacaggcaagt
gtatgcggcagtactcttgcgcttatggatgccggtgtgccaatcaaagcgcctgttgca
ggaatttctatcggccttattacaaaagacgacggcagttttattttacttactgacatt
caaggtatagaagacttctttggagatatggactttaaggtagcaggaaccagagaaggt
attactgccattcagcttgacataaaaatccatggacttacaagagaaattatcgaaaag
gcactctatcaggcaagagaagcacgactgaagattttagattttatgcaaactgtaatt
gacaagccaagaagcgagctttcaccttatgctccaaagatattcaaaactacagttgac
cctgaaaagattcgagacataattggaccaggtggaaagatgataaataaaatcatcgca
gagacaaacgtaaagattgatatagaacccgatggaagaatatttgttgcagcacctgat
gatatctctggtaacagggcaataagcatgattgagggaatcggtcgcgagattgaggtt
gggcaatttttccttggcaaggtgacaagaactgcatcttatggagcatttgttgaaata
tatcctggcaaagaaggacttgtgcatatatctcagttagatgagagaagattaaaatct
gtagacgaagttgtaaaagttggagatttggtgcttgtaaaggtaatagggattgacaag
cttggcagactttcactttcacgaaaagaagcactgaacgtaacatactcaagaaaagca
aaataa
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