Caldicellulosiruptor hydrothermalis: Calhy_1882
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Entry
Calhy_1882 CDS
T01346
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calhy_1882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chd03021
]
Calhy_1882
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_1882
Enzymes [BR:
chd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calhy_1882
Transcription machinery [BR:
chd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calhy_1882
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calhy_1882
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DUF4047
Motif
Other DBs
NCBI-ProteinID:
ADQ07592
UniProt:
E4QDH4
LinkDB
All DBs
Position
complement(1909708..1913199)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDMT
PRNLEKVLYFAAYVVIDPGDVPNLEKKQILSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLSQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMDLGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRSEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKKGDKGEGMIFSSEEEALLAYEHKVVGLHARIKVK
RTAEVNGEVISGLVETTVGKIILNQVIPQDLGFVDRSKRENLLKYEIDTLVDKKMLGKII
DRCIKVYGNTRTAEILDEIKELGFKFSTRGAITISVSDMVIPEVKQKLIAEAEQKVENIE
KLYRHGLISDQERYEQVISIWNQTKDKLTEELIQSLDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTDKGIWVEEIRDGTEVIETLEERIIGRYAASDIVDEKTGEVIVSK
NELITEEIAKKIIDAGINRVYVRSVLECKTRYGVCTKCYGLDLGTGQPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAVISEIEGYVSIKEDK
KRTITVRNDNGEERTYEIPYGARLKVNDGDYVQAGDELTEGSINPHDLLRIKGPRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEDSGDTELLPGDIVEIHRFEEENDKA
IAEGKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIVIEENQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggatttgttcaatttcgatgctattaaaatcagtcttgcttctcctgaaaagataaga
gaatggtcgcgcggtgaggttaaaaaaccagagaccataaactatagaacactcaagccc
gaaaaagatggacttttctgtgaaaagatttttggtccaacaaaggactgggaatgccac
tgcggaaaatataaaaaggtcaaatataaaggtgttgtttgtgataagtgcggtgttgaa
gtgacaaaagcaaaggtaagacgtgagagaatggggcacattgaacttgctgcccctgtc
tctcacatctggtattttaaaggtgtcccaagcagaatgggacttattttggatatgaca
ccacgaaatttagaaaaggttttgtactttgctgcatatgtggtaattgacccaggcgat
gtaccaaatttggaaaagaaacaaattctttctgaaaaagagtacagggaactaaaagag
aagtatggcgacaggttcaaggcaggaatgggagcagaggcaattaaagagctcttgaaa
gagattgaccttgataagctatcgcaggagctgaggcaagaacttgaaactgcaacaggc
cagaaaaagttaaagataatcaaaaggcttgaggttgttgaagcttttagaaaatctggt
aaccgtcctgaatggatgatacttgatgttatacctgttatcccacctgaacttcgtcca
atggtccagcttgacggcggaaggtttgcaacatcagacctaaatgacctttacagaaga
gtgataaacagaaacaacaggctcaaaaaactcatggatttgggtgcaccagacataatc
attagaaatgaaaagagaatgttgcaagaagctgttgatgctcttatagacaatggaaga
agaggaagaccggtaacaggtcctggtaacagaccactaaaatcactttctgatatgctc
aaaggaaagcagggaagattcagacagaaccttttggggaaaagagttgactattcaggg
cgttctgttatagttgtagggcctgagcttaagatttaccagtgtggtcttccgaaagag
atggctttagagcttttcaaaccgtttgtcatgaaaaagcttgttgaaaaaggaatttgc
aacaacataaaaaatgcaaaaaaagctgttgaaagacagagaagtgaagtttgggatata
ttagaagaagtaataaaagaccatccagtactgctaaaccgagcacccactttgcacagg
cttggtattcaggcttttgagccagtacttgttgaaggaagggctataagacttcatcca
cttgtttgtacagcgtacaatgctgactttgacggtgaccagatggcggtacacgttcca
ctttctgccgaggctcaggctgaagccaggtttttgatgttatctgcaaacaacctgtta
aagccggcagatggcaaacctattgtagttccaacccaggatatggttttgggaatttac
tacctcactcttgaaaagaaaggtgacaagggtgaggggatgatattctcatcagaagaa
gaagcgcttttggcatatgagcacaaagttgttggtcttcatgcaaggataaaggttaaa
agaacagcagaagtaaacggagaagttatctctggacttgttgagacaacagttggcaaa
atcatattaaatcaggtaataccgcaggaccttggttttgttgatagaagcaagagagaa
aatcttttgaagtatgaaattgacacacttgttgacaaaaagatgcttggaaaaattatt
gacaggtgtataaaggtttatggaaatacccgaacggcagagatactggacgagataaaa
gaacttggatttaaattttcaacaagaggagcaattaccatctcagtttcggacatggta
attccagaagtcaagcaaaagctcatagcagaggcagaacaaaaggttgagaacattgaa
aaactatacagacatggtttgatttctgaccaagaaagatatgaacaggtaatttctata
tggaaccagacaaaagacaagcttaccgaagagcttatccagagccttgatgagttcaat
ccaatatttatgatggcaaattcgggtgcaaggggttccaaaaaccagatatcacagctt
gctggtatgaggggactgatggcaaatccgtctggtaagacaatagagatgccgattaaa
tcaaactttagagaaggactcaatgttatagagtttttcatctcaacacacggtgcacgc
aaagggcttgctgacacagcgctcagaactgcagactcaggatatttaacaagaagactt
gtggatgttgcacaggacataattgtaagggaagaggactgtggtacagacaaaggtata
tgggttgaagagataagagatggcacagaggtaattgaaacacttgaagagaggattatt
ggaagatatgcagcttctgatattgttgatgaaaaaacaggtgaagtaatagtaagcaaa
aatgagctcattacagaagaaatagctaaaaagataatagatgcaggaatcaacagggta
tatgtaaggtcagttttagagtgcaaaacaagatacggtgtttgtacgaaatgttatgga
cttgaccttggtacagggcagccagtgaatgtaggagaagcagttggtatcattgcagca
caggctataggtgagccgggtactcagcttacaatgagaacatttcacacaggtggtatt
gctgggcaggacattacgcaaggtcttccaagggttgaggagctgttcgaggcaagaaaa
ccaaagggtgttgctgtgatttctgaaatagaagggtatgtttcaataaaagaagacaaa
aagaggacaataacagttcgaaatgacaatggtgaagagagaacgtatgagataccgtac
ggagcaagattaaaggtaaacgatggggattatgttcaggcaggagatgagctgacagaa
ggttcgataaatccgcacgaccttttgaggataaaaggaccaagaggtgttcagagctat
cttttagctgaggttcagaaagtttacaagatgcagggcgttgacataaacgacaagcac
atagagataataatcagacagatgatgaagaaggtcaagatagaagactctggtgatacc
gaacttttgcctggtgacattgtagagatacacaggtttgaagaagagaacgacaaggca
atagcagaaggaaaacgtcctgcgcttggcagaagggtgcttcttggaataacaaaagca
gcactctctactgagtcgttcttgtctgctgcatcattccaggagacgacaagggtattg
acagatgcagcaataaaagggaaagttgatcctctgattggtcttaaggaaaatgtcatc
attggtaagctaattcctgcaggaactggaatggcaaagtacagaaatattgttattgaa
gagaaccagtaa
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integrated database retrieval system
