Caldicellulosiruptor hydrothermalis: Calhy_1980
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Entry
Calhy_1980 CDS
T01346
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03410
Base excision repair
chd03430
Mismatch repair
chd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Calhy_1980
03430 Mismatch repair
Calhy_1980
03440 Homologous recombination
Calhy_1980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_1980
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Calhy_1980
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Calhy_1980
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Calhy_1980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADQ07690
UniProt:
E4QDZ9
LinkDB
All DBs
Position
complement(2025272..2027668)
Genome browser
AA seq
798 aa
AA seq
DB search
MIFQKKRWILKDNNNIENMDIEIDGRKIKPQIIKVLNNRGVQEKEEIERFLNPSLKNLHN
PFLLPDMKEAVKIINQAILHKNRVLIYGDYDCDGVTSTYLLYSALRNFLPTTYYIPNRFK
DGYGLNLDVLKKLEGKFDLLITVDTGISSHNEVKYLKEKGKEVIITDHHEPKEVLPDADA
VINPKRKDSTYPFRDLAGVGVAFKLLHALKNSGVNLKLSEYLDVVAIGTIADVMPLVDEN
RIFAKFGLKVLKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRISDANLAV
SLLLEQDVIKAESIAKKLDEENRKRQEIEEKTIKEAQGLIAKNKSILKKKIFVLSNSSWH
AGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAEILLKFGGHE
HAAGLSLPVDNVDKLDEILNSIAQDYHFMIFKPAIEVDLVLSLNEIDDELIDQVYLLEPF
GVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCFSNLEDEDELISMKKVD
IVCKLEKNLFNSVRKNQFNIIDICENISFGVVKDLYNNLKTVRNNHSSFQRYKVKRGSLQ
EIESRRCIFVAFWPHIVLNFLKFLKGEDVEGEFFEFLNKQGRIIQHQSSLKEVYFDDIFA
TRLDKLNSIMDEADLVVALDMPSYQYVKNFYQYANILLIDLDNKFDEFSLQINEECVNVY
KTLRDCEFISYNFSGIYESDPFLKVVKLLFIVQMFEEAGLILAEVTHEGIEVKEFFKTQE
KVNLKSTKVYSFYRTLKG
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcagaagaagagatggattttaaaggataacaataacattgaaaatatggat
attgaaattgatggcagaaagattaaacctcaaattataaaggttttgaacaatagaggt
gtacaggaaaaagaagaaatagaaaggtttttaaatccttcactgaaaaatctccacaat
ccatttcttttgcctgatatgaaagaagcagttaaaatcataaaccaagctattttgcac
aaaaatagggtgctcatatatggtgattatgactgcgatggagttacaagtacatatttg
ctttattcagctttgagaaatttcttgcccacaacatattatattcccaatagatttaaa
gatggatatgggctcaatcttgatgttttaaagaaactggaaggtaagtttgacctgctt
attactgttgacacaggcatcagtagccacaatgaagtgaagtatcttaaagaaaaaggg
aaagaggttataatcacagaccatcatgaaccgaaggaagttttgccagatgctgatgct
gtgataaatccaaaaaggaaagatagcacttatcctttcagggatttggcgggtgttggg
gtggcgtttaaacttttacatgcacttaaaaactcaggggtaaatcttaaactgtctgag
tatcttgatgttgttgcgattggtacaattgcagatgttatgccactcgttgatgaaaac
aggatttttgcaaagttcgggcttaaggttttaaaaaatacgaaaaatgttggactaaag
aagctcatagaagtagctggactttcgtcaaaagaggagctgaaaccctatgatgtatca
tttataataggtccaagactcaatgccgctgggcgaatttctgatgcgaatttggctgtg
tcacttcttttagagcaggatgttataaaggcagagagcatcgcaaaaaaacttgacgag
gagaatagaaagcgtcaggaaatagaagaaaaaacaattaaagaagcccagggtttaatt
gctaaaaataagagtattttgaagaagaagatatttgttcttagcaatagttcgtggcat
gctggagttgttgggatagcttcttcaaaaatcacagaaaagtattacagaccttctctt
ttgctgacactcgctgacgagggtgttttaaaaggttcaggaaggtcaattaaaggtttt
aacttgtttgaagcactcagaaactgtgcagaaattttgctcaagtttggtggtcatgaa
catgcagcaggtctttcacttcctgttgacaatgttgacaaacttgacgagattttaaac
tcaattgcacaggattatcattttatgatattcaagccggcaattgaagttgaccttgtg
ctctctttaaatgagattgatgatgaacttatcgaccaggtttatcttttagaaccgttt
ggggttgggaatcctgaacctacttttttgattaaaaatcttgttgtggagaattttagg
ttcatgggtgatggcaacaaatactacaaattttttgctggcaactcaacaaaatatgat
gttgtgtgcttttccaacttggaagatgaagatgagctgatttcaatgaaaaaggttgac
attgtttgcaagctcgaaaaaaatctttttaacagtgtgagaaaaaatcagttcaatatc
attgacatctgtgaaaatattagttttggggtggtaaaggacctatataataatttgaag
actgtaagaaataaccactcaagctttcagagatataaagtgaaaagaggcagcttgcag
gagatagaaagcagaaggtgtatctttgtagctttttggccgcacattgttcttaatttt
ttgaaatttttaaagggagaagatgtggagggtgagttttttgaatttttaaacaaacaa
ggtagaataattcagcatcaaagtagtctcaaagaggtgtattttgacgatatctttgca
acaaggcttgataagctaaattccattatggatgaggcagatttagttgttgctcttgat
atgccttcttatcagtatgtcaaaaacttttatcaatatgctaacattcttttgattgac
cttgataacaaatttgatgaattttcactgcagataaatgaagaatgtgttaatgtttat
aaaacactgagggactgtgagtttatatcttacaatttttcgggtatatatgaatcagac
ccatttttgaaggtagtaaaattgctttttattgtccaaatgtttgaagaggcaggtctc
attttagcagaggttactcacgagggaattgaggtaaaagagttttttaaaacacaagaa
aaggtgaacctaaaatctacaaaggtgtacagcttttacagaacattgaaaggataa
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