Caldicellulosiruptor hydrothermalis: Calhy_2018
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Entry
Calhy_2018 CDS
T01346
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calhy_2018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_2018
Enzymes [BR:
chd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calhy_2018
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Calhy_2018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
MotCF
Motif
Other DBs
NCBI-ProteinID:
ADQ07728
UniProt:
E4QEA9
LinkDB
All DBs
Position
complement(2063598..2067023)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLEKLESFKRLEEDVIKKSLPLVVTGLGEMGKALVVKSLCEKFNKKALFITTQRAKL
EWERRFMSLFNSVVSLQERENPFVVSFAKSRDSEINRMEQFVKIFEDGFDVLILSSQNLF
EKYTNLKFDYIHLTEGLDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVASR
YPVRIEFFGDTIDTIRLFDVETQKSFERIDSVKIYKAIEWDLEEDFSEGLKRVKEDYKKM
KLKLKEDGRKNLEESFREVVEELQLNVERLYPYYYQQFFSVIDIFGECLIFVDEYNQVYS
SLKAFEQEMQEMFSDLLEKGFVLPKMADCYFTVNEILQKFSSTIILQTFASSIKELELRE
IISFNFFRELPTYNAQKEVLIDDLKYYMSKNYTINIFTGSRTSLEDLEEALLKENIQFFE
LDEPEIEKPGVYLIAKSAEKGIEIHDIKWVCLSFFHLEKKKETEAKKRVKSKKDTFYTVE
DLKPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDVIEKYIGT
DDVQPKLSKLGSQEWQKQKQKVRKSLEVVAKDLVELYAKRQLNKGFKFSKDTVWQKEFEE
RFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRYPVQTFVLEYNERIIKEAILKEISRGGQVFYLYNRVKDIQEVAAKLQNLVGD
SVKIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRG
AGSIVGKLQHGHINSVGYDMYIRLLSEEIRRLKGENIQPEIEPQIDVKVSAFISSSYIDD
EKERINMYKKISSIESKDDVNDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKAGIISIL
QLQECLFKLQFFNSEMILKAMNKFLQQGLSCSQNKDDCLQLTLENNWLDTLIAILEDLQE
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaaacttgaaagtttcaaaaggcttgaagaagatgtaataaaa
aagagccttcctcttgttgttacaggccttggtgagatggggaaggcgcttgtggtcaaa
tctctatgtgaaaagtttaacaaaaaggcgttgtttatcacaactcaaagagcaaagctt
gaatgggaaagaaggtttatgagcctttttaatagtgtggtgagtctacaagagagagaa
aatccttttgtggtatcttttgcaaagagcagagattctgaaattaacagaatggaacaa
tttgtgaagatttttgaggacggttttgatgttctcatattaagtagccagaaccttttt
gaaaagtacacaaatttaaagtttgattatatccatctcacagaaggtcttgacattcag
cttgaaatccttatagaaaagcttttaaaattcggatatgaaagagtgaaaactgtcgaa
aagaaaggacagttttcacaaaagggtggcatagttgatatatatcctgtagcaagtagg
taccctgtgaggattgagttttttggagatacgatagacacaattagactttttgatgtt
gaaactcagaagtcttttgaaagaatagatagtgtgaagatttacaaggcaattgagtgg
gatttggaagaggacttttcagaaggtttaaaacgcgttaaggaagactacaaaaaaatg
aaattgaaattgaaggaagatggcagaaaaaatttagaggagagtttcagagaggttgta
gaagaacttcaactaaatgttgaaagactgtatccctattactaccaacaatttttctca
gttattgatatttttggtgaatgtcttatctttgttgacgagtacaaccaagtctatagc
agcttgaaagcttttgaacaagagatgcaagagatgttttcagaccttttagaaaaaggg
tttgtgcttccgaagatggcagactgttattttactgttaatgagattttgcaaaagttc
tcaagcaccataattcttcaaacatttgcatcttctattaaagagcttgaactgagagag
attatatctttcaacttctttcgagaacttcccacctacaatgctcagaaagaggtttta
attgatgatttgaagtattatatgtcaaaaaactataccataaacatctttacaggaagt
cgaacatcccttgaggatttagaagaggcacttttaaaagaaaatatacagttttttgag
cttgatgagccagaaatagaaaaaccgggagtatatctaatagccaagtctgccgaaaag
ggcattgaaatacatgatatcaaatgggtttgcctttcatttttccatcttgaaaagaaa
aaggaaacagaagcaaaaaagagggtaaaatctaaaaaagatactttttatactgttgaa
gatttaaaacctggcgattttgttgttcacaggacatatggtattggcaaattcttgggg
tttgaaaagattactgtcgaaggcacaacaaaagagtatgtaaagcttgaatatgctaac
tcttcttacctatatgttccaaccacaaacttagatgtgattgaaaagtatattggaact
gatgatgtacagccaaaactatctaagcttgggtcacaagagtggcaaaagcagaaacaa
aaggtaagaaaatctcttgaggttgtggcaaaagacttggttgagctttatgcaaaaaga
cagctcaacaaaggttttaaattttcgaaagatactgtgtggcaaaaagagtttgaagag
aggtttccatatacagagacagaaggtcagcttcaggccatagaagagattaagagggat
atggaaagtgaaaagccgatggatagaatactttgcggcgatgttggctatggcaagact
gaggttgcaatgagagcggccttcaaagctgtgatggattcaaaacaggtggcagtactt
gttcccacaaccattcttgcgcagcagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaggttctctcacgtttaaaaaatgagacacaacaaaagaagata
ataaaagggttaaaagaaggtacaattgacattgtgattggtacgcacaggctactttcg
agcgatgttaagttcaaagaccttggtcttttgattattgatgaagagcacaagtttggt
gttgaagcaaaagagaagataaaaaagctaaaaacaaatgttgatgttctgaccctcacc
gcaacacctataccaaggacacttaacatggcacttttgggaatcagggatttgagcgtg
attgaagacccgcctgaagatagataccctgtgcagacatttgtgcttgagtacaatgaa
aggataataaaggaggctattttgaaagaaatttcaagaggaggtcaggtattttatctt
tacaacagggtaaaagacatacaagaagtggcagctaaacttcaaaaccttgtgggcgat
agtgtgaaaattgcgtgtgctcatggtcagatggaagaagaggagcttgaagaggtcttg
attgattttattgagggcaggtacgatgtgcttgtgtgtacaacaattatagagtctggg
gttgacatgccaaacgtcaatacacttattgtggaagacagcgatagacttggtcttgct
cagctttatcagctaagaggaagggtaggtcggtcttcaaggcttgcatatgcatatttt
acatttagaaaagacaaggtgctgtccgaacaggcacagaagagacttgctgcaataaag
gagtttacagaacttgggtctggttttaaaattgccatgagggaccttgagataagaggt
gctgggtctattgttggaaaacttcagcatgggcatataaacagtgttggatatgacatg
tatataagacttctttcagaagagataaggcgtcttaaaggcgaaaatatacagcctgag
attgaacctcagatagatgtaaaggtaagcgcgtttattagcagcagttacattgacgat
gaaaaagagagaattaatatgtacaaaaagatttcgtcaatcgagtcaaaagatgatgta
aacgatatttatgatgagctaatagacaggtttggagatgttccaaaagaggttgacaat
ttaataaaggttgcgtacttgaaatgtttgtgtaaaaaggcagggataataagtattttg
cagcttcaagaatgtctttttaaacttcagttttttaacagtgaaatgattttaaaagca
atgaacaagtttttgcagcaaggactttcatgttcgcaaaacaaggacgactgcttacag
cttactttagagaataactggcttgataccctgatagctattttagaagatttacaagaa
aattaa
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