Cardinium endosymbiont cEper1 of Encarsia pergandiella: CAHE_0030
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Entry
CAHE_0030 CDS
T02243
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
che
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Pathway
che02020
Two-component system
che02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
che00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CAHE_0030 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CAHE_0030 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
che03021
]
CAHE_0030 (rpoN)
Transcription machinery [BR:
che03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CAHE_0030 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
LacI
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CCM09812
LinkDB
All DBs
Position
34582..36000
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AA seq
472 aa
AA seq
DB search
MQKLQLEQRLTQRLSGQQIQFIKLLQVPTVALNDYISKEVVTNPLLDEVKEVASEELSCL
SEQLAQDFSDYRSIDLNKKIYKTEAHPTRDLWTPAIVSLQEKLREQLHLLHLNKIGYIIG
EHLIGSLDQNGYLSCDLETVLQDLHVMHYLELSLEEVEEVLTAIQDLDPPGIAARNLQEC
LLIQLKGQNQKDPLIQLSQRVVSSCFEAFTKKHYGVMVKKLGVTDTNFLKKALAHIARLN
PRPGQHNNGIGYGNEYLTPDFIILENRGKLSVELVHYPIYKPRFNKRYLNILETYEKKRK
QDLKSQEMIAFLRKNLEHAKWFMEALSQRSETLLKTMEAILQLQYAFFSEEEETDKLKPM
VLQHVADRVGMDASTVSRIVNQKSVQGRFGVYPLKFFFSEAINRSTGEDISNKVVKNRIL
ELINTEHKKNPYSDERIVALLAAEGYNVARRTVTKYRKQLHLPVARLRKILI
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagttacaattagaacaacggttaacccagagattgtcgggacaacaaattcaa
tttattaagttattacaagtacctactgtagcacttaacgactatatctcaaaagaggtc
gttacgaatcctttattagatgaggtaaaagaggtggcaagtgaagaactatcttgccta
tcagaacaacttgctcaggatttttctgattatcgttcaattgatttaaataaaaaaata
tacaaaacagaggctcatcccacgcgtgacctttggacgccagctattgtttcactacaa
gaaaaattgagagaacaacttcatttgctccacttaaataagataggatatataataggt
gaacatctaattggtagtttagatcaaaatggctacctttcatgtgatttggaaacagtg
ttacaagatcttcatgtaatgcattatttagaactgtctctagaagaagttgaagaagta
ttaaccgctattcaggatttagatccacctggcattgcagctagaaatctacaagagtgt
ttattaattcaactgaaagggcaaaatcagaaagatccacttattcagttgtcacagcgt
gtggtaagtagttgttttgaagcttttacgaagaaacactacggcgtaatggttaaaaaa
ttaggcgttactgacacaaattttttaaagaaagcactggcacatattgctcggcttaat
cctaggccaggccaacataataatggaatagggtatggcaatgagtatcttactccagac
tttataattttagaaaatcgaggaaaacttagtgttgaactggttcactacccgatttat
aagccacgttttaataaaagatatcttaatatactggaaacgtatgagaaaaaacgtaaa
caagatttaaaaagtcaggagatgattgcttttttaagaaaaaatctagagcatgccaaa
tggtttatggaagcgctgagtcagcggagtgaaacacttttaaaaactatggaagcaatt
ttacaactgcaatatgctttcttttcagaagaggaagaaactgataaattaaagccaatg
gttttgcagcatgtagccgatagagttggtatggatgcgtctactgtttcaagaattgtc
aaccaaaagtcagtacaaggtaggtttggtgtatatcctctaaagttttttttctctgaa
gccatcaacagatctactggagaagatattagcaataaggttgttaaaaacagaatttta
gaattaattaatactgagcataaaaaaaatccttactcggatgaacgtattgtagcgtta
ttggcagctgagggatataatgtggcacgccgtaccgtcactaagtacagaaagcaattg
catctaccagttgctaggttacgaaagatactgatataa
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