Cardinium endosymbiont cEper1 of Encarsia pergandiella: CAHE_0122
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Entry
CAHE_0122 CDS
T02243
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
che
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Pathway
che03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
che00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAHE_0122 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
che03021
]
CAHE_0122 (rpoA)
03400 DNA repair and recombination proteins [BR:
che03400
]
CAHE_0122 (rpoA)
Enzymes [BR:
che01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAHE_0122 (rpoA)
Transcription machinery [BR:
che03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAHE_0122 (rpoA)
DNA repair and recombination proteins [BR:
che03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAHE_0122 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L_2
Tfb5
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
CCM09904
UniProt:
K0P1V7
LinkDB
All DBs
Position
complement(132442..133425)
Genome browser
AA seq
327 aa
AA seq
DB search
MSLLAFQMPKKIFVEQVDAFHGIFSFRPLEKGYGTTIGNALRRVLLSSLEGYAIVAIKIP
GIRHEFSTIEGVREDLVQIILNLKQVRLKKKLEGGNDIISVRVNKPEFRAGDIVEATSFF
EVLNPDLLICRLDASASFDIELHIMKYRGYLSAEEHKPKEPILDLIPIDAIFSPIISVQY
RVENMRVEQRTDYEQLTFEVKTDGSITPEESVRQAAKLMIQHLNLLSGQEIVVQSLEDET
VQILDEETVALQKNLRTHISELQCSSRVLNCLKSAGIETLEDLVTVKDFDTMKFRNFGRK
SRDEIDQLLAEKHLKIGMDLSRYKLDG
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttattagcctttcaaatgccaaagaagatatttgtggagcaagttgatgctttt
catggtatttttagttttcgtccacttgaaaagggatatggtactactattggtaatgca
cttagacgtgtattattatcttctttagaagggtatgctattgttgcgattaaaattcct
ggtatccgtcacgaattttctacgattgaaggggtacgagaagatcttgtacaaatcatt
ttaaatcttaagcaggtccgcttaaaaaaaaaattagaaggtggtaatgatattatttct
gttcgggttaataaacctgagtttcgtgcaggtgatattgtagaagctacttcttttttt
gaagttttaaatccagatctattgatttgtaggcttgatgcatcggccagttttgacata
gaacttcatataatgaagtataggggctatctttcagctgaggagcataaacctaaagaa
ccaatcttagatcttattcctattgatgctatcttttctcctattatcagtgtacagtat
cgtgttgagaatatgcgtgtggagcaacgtaccgattatgagcaattgacatttgaagta
aaaacagatggttctataactccagaagaaagcgttagacaagcagctaagttaatgatt
caacaccttaacttgttatctggtcaggaaattgttgtgcaatcactagaggatgaaacc
gttcaaatattagatgaagaaacagtagctctgcaaaaaaatcttagaacccatattagt
gagctgcaatgttcttctcgtgtattaaattgtcttaaatcagcaggtattgaaacttta
gaagatcttgtaaccgtaaaagattttgatactatgaagtttagaaactttggtcgtaag
tcacgtgatgaaattgatcaacttttggcagaaaagcatctaaagattggtatggatctc
tctaggtataaattagatgggtag
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