Cardinium endosymbiont cEper1 of Encarsia pergandiella: CAHE_0479
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Entry
CAHE_0479 CDS
T02243
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
che
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Pathway
che03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
che00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAHE_0479 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
che03019
]
CAHE_0479 (recQ)
03400 DNA repair and recombination proteins [BR:
che03400
]
CAHE_0479 (recQ)
Enzymes [BR:
che01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAHE_0479 (recQ)
Messenger RNA biogenesis [BR:
che03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAHE_0479 (recQ)
DNA repair and recombination proteins [BR:
che03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CAHE_0479 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
HemN_C
Thioredox_PDIA6_C
Motif
Other DBs
NCBI-ProteinID:
CCM10256
UniProt:
K0P675
LinkDB
All DBs
Position
complement(497500..499428)
Genome browser
AA seq
642 aa
AA seq
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MDKIYDLLKKHWGYSSFRPFQEAIMKGILDGKDILVFLPTGSGKSLCFQLPALRKTGLTL
VVTPLIALMKDQVTQLAQKGIHAEAIFSGMSSLEIERRLDNCVYGTVKLLYVSPERLQTD
LFKLRAATMPITTLVVDEAHCISQWGYDFRPSYLEIAHFKQTIPKANTVAFTATATKRVK
QDIQDCLQLNHPLLFAQTFHRPNLVYWVRKTDQKETQLLKALQQSNGPAIIYVNTRKKTE
NIATFLQKNGITSAFYHAGLTTADRATKQALWSENKVRTMVATAAFGMGIDKADVSLVMH
LDLPASLEAYCQEAGRAGRNNATAYAILWYDEQDIAHLKQKWKESYPTIDQVRKVYQHLV
NYYKIAVGSHAFVTYDFDLEDFKQTTGLYAKEAYYGIKALESDGFIQLNEAYYQPSRVYF
LLSREALYAFQLRHPAYDLCIKALLRLYGGTLFTPYCKIIEKKIAQFIHITEYKVADQLD
ALHRLKVLEYLPQKASPQITFLTPRYLAAELPLPIHKIEQKNKIAYQQIEAVIEYVTNDR
RCRLATLLDYFDEAETTCNQCDICKKKSNEAIHHTAMLEGRHYVMNAIRNGKQDLKNIIE
TVDYDKEKELLHIIRAMLDAKEIYYQKPGELEINEPSKPLHG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatttatgatttattaaaaaaacattggggctattcttcctttagacctttc
caagaagcaatcatgaagggtattttagatggcaaagatatattggtttttttacctact
ggaagtggaaaatcgctttgttttcaattaccagccttgcggaaaacaggtttaacctta
gtggttacgccacttattgcgcttatgaaagatcaagtaacacaacttgcgcaaaaaggt
attcatgcagaagctattttttcaggcatgtctagtttagaaatagaacgacgactagat
aattgtgtatatggtacagttaaactattgtatgtatccccagaacgcttgcagactgac
ctatttaaactgcgtgcggctactatgcctattacgaccttagtagtagatgaggcgcac
tgtatttcacaatggggatatgattttagaccctcttatttagaaattgcgcactttaag
caaacgattccaaaggccaatacagtagcctttacagctactgccactaaaagggttaaa
caggatattcaagattgtttacaactaaaccatccgcttctttttgctcaaacttttcat
aggcccaatctagtctactgggtacgcaaaacagatcaaaaagaaacacaactgctcaaa
gcattacaacagagcaatggaccagctattatttatgtaaatacacgcaaaaaaacagag
aacatcgctacttttttgcaaaaaaatggtattaccagtgcattttaccatgctggttta
acgacggctgatcgagctacaaaacaagctttatggagcgaaaataaagtacgaaccatg
gttgctacagctgcttttggcatggggattgataaagcagacgtttctttagtaatgcat
ttagatctacctgcctccttagaagcctattgccaagaagcaggaagagcaggtcgaaat
aatgctacagcctacgctattctttggtatgatgaacaagatattgcacatttaaaacaa
aagtggaaggaaagttaccctactattgatcaagttagaaaagtttaccaacatctggtt
aattactataaaatcgcagtaggctctcatgctttcgttacctacgattttgatttagag
gattttaaacaaacaactggtctgtacgcaaaagaagcctactatggcatcaaagcatta
gagtcagacgggtttatacaacttaatgaagcctattaccaaccttctagggtctatttt
ttgctatctagggaagcattgtatgcgtttcaactccgtcatccagcttatgacttatgt
atcaaagcccttttaaggctctatggtggtacactttttacaccatattgtaaaattatt
gaaaaaaaaatagcccagtttattcacattacagaatacaaagtagccgaccaattagat
gccctgcatcgactcaaggttctagaatatcttccacaaaaagcgagtccacaaattact
ttcttaacaccacggtatcttgctgctgaactgccattgcctattcataaaattgagcaa
aaaaataaaatagcctatcaacaaatagaagctgttatagaatatgttaccaacgaccga
cggtgccgcttggctacattattagattattttgatgaagccgaaacgacttgtaaccaa
tgcgatatttgtaaaaaaaagagcaacgaagctatacaccatacagcgatgctagaaggc
cgccattacgttatgaatgccattagaaatggcaaacaggaccttaaaaatataatagaa
acagttgattatgataaagaaaaagaacttttacatattataagagcaatgctagatgca
aaagaaatatattatcaaaagcctggcgaactagaaatcaatgaaccttcaaagccgtta
catggataa
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