KEGG   Chelativorans sp. AA-79: PVE73_01160
Entry
PVE73_01160       CDS       T09422                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
chea  Chelativorans sp. AA-79
Pathway
chea03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:chea00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PVE73_01160 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chea03021]
    PVE73_01160 (rho)
   03019 Messenger RNA biogenesis [BR:chea03019]
    PVE73_01160 (rho)
Transcription machinery [BR:chea03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PVE73_01160 (rho)
Messenger RNA biogenesis [BR:chea03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PVE73_01160 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 NACHT AAA_22 S1CSD-TOTE-2 Fungal_virus_P2_C AAA
Other DBs
NCBI-ProteinID: WEX09613
LinkDB
Position
226515..227780
AA seq 421 aa
MQEMKLQELKSKSPTDLIAFAESLEVENASIMRKQELMFAILKKLSMQDIEIIGDGVVEV
LQDGFGFLRSATANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVN
TINFEDPEKIRHKIHFDNLTPLYPDERLRMEIENPTTKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAS
RHVQVAEMVIEKAKRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIYPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKGNAEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaggaaatgaaactccaagagctgaagagcaaatcgccaaccgaccttattgcattt
gcagagtcgctcgaggtcgagaacgcgagcatcatgcgtaaacaggagctgatgttcgca
atcctgaagaaactctcgatgcaggacatcgagatcatcggcgacggtgtcgtggaggtc
ctccaggatgggttcggcttcctgcgatccgccactgccaactatcttcctggtccggac
gatatctacatttcgccttcgcagatccggcgtttttcactcaagaccggcgatacggtc
gaagggcccattcggagtcccaaggagggtgagcgctactttgccctgctcaaggtcaat
acgatcaatttcgaggatcccgagaagatccggcacaagatccacttcgacaatctgaca
ccgctttatcctgacgagcggctaagaatggagatcgagaatccgacgacaaaggatctt
tcaccgcgggtgatcgaccttgtcgcgccgctgggcaaaggccagcgaggactgatcgtg
gcgcctccccgtacgggtaaaacggttctgcttcagaacatcgctcactcgatcacgacc
aatcatccggagtgctacctcatcgtccttctgatcgatgagagaccggaagaggttacg
gatatgcagcgctcggtgaaaggtgaggttatctcctcgacctttgacgaaccggcctcg
cgccatgtccaagttgccgagatggtaatcgagaaagcaaagcgtctggtagagcatggg
cgagatgtcgtcattcttctcgattcggtcacccgcctcggccgcgcctacaacactgtc
gtgccatcttcgggcaaagtcctgaccggtggtgtggacgccaacgccttgcagagaccg
aagcgcttcttcggcgcagcccgcaatatcgaggaaggcggctcactcaccatcatcgcc
acggcgcttatcgacacgggcagccgcatggacgaggttattttcgaagagttcaaagga
acgggcaattccgagatcgtgcttgaccgcaaggtggccgacaagcggatctaccccgca
atggacattctcaaatccggaacccgcaaagaggacctcctggtgcctcgtcaggatctt
cagaagattttcgtgttgcggcgaatccttgcacccatggggacgacagacgccattgag
ttcctcatcgataagctcaaacagaccaagggtaacgccgagttctttgattccatgaat
acttga

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