Chelativorans sp. AA-79: PVE73_09975
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Entry
PVE73_09975 CDS
T09422
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
chea
Chelativorans sp. AA-79
Pathway
chea02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chea00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PVE73_09975 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chea03021
]
PVE73_09975 (rpoD)
Transcription machinery [BR:
chea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PVE73_09975 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
COG2p_C
Motif
Other DBs
NCBI-ProteinID:
WEX11227
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All DBs
Position
2065280..2067292
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AA seq
670 aa
AA seq
DB search
MATKEKEEVEIEREGTDGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSGEVSSEQI
EDTMAMLSDMGINVVEDDEAGEEAESDGSGDEESTELTEASSGPVATVAKKEPTDRTDDP
VRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNDGKIL
LREIIDLEATYAGPEGKQAPVIARPDEETKPAAEEKERVRRTREDDDITNVGGEAAPEED
DEEEDEANLSLAAMEAELKPGVMETLDFIADTYAKLRKLQDQEVESRLADADKLSAGQER
RSKQLKDELIKSVKSLSLNNARIETLVEQLYDINKRLVQNELRLYRLAESYGVRREDFLK
AYQGSELNPNWGGTVSALPQPGWKEFVRSETDTIDALRSEIQNLATETGISIGEFRRIVN
QVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEEL
AEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAVLPIDAAIQANLRET
TTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSR
SRKLRSFLDS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaggaaaaggaagaggtcgagatcgaacgcgagggcaccgacggtcctctg
ctcgacctttccgacgacgcagtcaagaaaatgatcaagctcgcgaagaagcgcggctat
gtgaccatggacgagctgaacgcggtgctgccttccggcgaagtgagctccgagcagatc
gaggacaccatggccatgctctccgacatgggcatcaatgtggtcgaggacgacgaggcg
ggcgaggaagccgagtcagacggttcgggcgacgaggaaagcaccgagttgaccgaagcc
tccagcgggcccgtggccaccgtcgccaagaaggagccgacggaccgcaccgacgacccc
gtgcgcatgtatctgcgcgagatgggctcggtggaacttctgtcgcgcgagggcgagatc
gccatcgccaagcgcatcgaggccggccgcgagaccatgatcgccggcctttgcgagagc
ccgctcaccttccaggcgctcatcatctggcgcgacgaactcaacgatggaaagatactc
ctgcgcgagatcatcgatctcgaggcgacctatgccggccccgagggcaagcaggcgccc
gtgatcgcgcggccggacgaggagaccaagcccgcggccgaggaaaaggagcgcgtgagg
cgcacccgcgaggacgacgacatcaccaatgtgggcggcgaggcggccccggaagaagac
gacgaggaagaggacgaggccaatctttcgctggccgccatggaggccgagctgaagccc
ggcgtcatggaaacgctcgacttcatcgccgacacctatgccaagctgcgcaagctgcag
gaccaggaggtggagagccgcctggccgacgcggacaagctgtcggccgggcaggaacgc
cgctccaagcagctcaaggacgagctgatcaagtcggtgaagtcgctgtcgctcaacaat
gcgcgtatcgagacgctcgtcgagcaactctacgacatcaacaagcggctggtgcagaac
gaattgcggctctaccggctcgccgagagctacggcgtcaggcgcgaggacttcctgaag
gcctatcagggctccgagctcaacccgaactggggagggacggtttcggccctgccgcaa
ccgggctggaaggaattcgtcaggagcgagacggacacgatcgacgcgctgcgctcggaa
atccagaacctcgccaccgagacgggcatctccatcggcgagttccgccgcatcgtcaac
caggtgcagaagggcgaacgcgaggcagccatcgccaagaaggagatggtggaggccaat
ctgcgcctcgtgatctccatcgccaagaagtacacgaaccgcggcctgcaattccttgat
ctcattcaggaaggcaatatcggcctgatgaaggcggtcgacaagttcgagtatcggcgc
ggctataagttctccacctacgccacgtggtggatccggcaggcgatcacgcggtcgatc
gccgaccaggcgcgcaccatccgcatccccgtgcacatgatcgagacgatcaacaagatc
gtgcggacctcccgccagatgctgcacgagatcggccgcgagccgacgccggaggaactg
gccgagaagctcgccatgccgctcgagaaggtgcgcaaggtgctgaagatcgccaaggag
ccgatctccctcgagacgcccgtgggtgacgaggaggattcgcatctcggcgacttcatc
gaggacaagatggcggtgctgccgatcgatgcggcgatccaggcgaatctgcgcgagacg
accacgcgcgtgctcgcctcgctcaccccgcgcgaggagcgcgtgctcaggatgcgcttc
ggcatcggcatgaacaccgaccacacgctggaggaagtcggccagcagttctcggtgact
cgcgaacgcatccgccagatcgaggcgaaggcgctccggaagctcaagcatccgagccgc
agccggaagctcagaagcttcctcgacagttaa
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