Chelativorans sp. AA-79: PVE73_12690
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Entry
PVE73_12690 CDS
T09422
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chea
Chelativorans sp. AA-79
Pathway
chea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVE73_12690 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chea03019
]
PVE73_12690 (rnr)
03016 Transfer RNA biogenesis [BR:
chea03016
]
PVE73_12690 (rnr)
Enzymes [BR:
chea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PVE73_12690 (rnr)
Messenger RNA biogenesis [BR:
chea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVE73_12690 (rnr)
Transfer RNA biogenesis [BR:
chea03016
]
Prokaryotic type
tRNA degradation factors
PVE73_12690 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
WEX11890
LinkDB
All DBs
Position
complement(2618537..2620780)
Genome browser
AA seq
747 aa
AA seq
DB search
MPSREELLAFITENPDRAGKREISKAFGLKGGDRIWLKDLLREMQDEGLLKQKRRRLSRP
GTLPRMVVLDIFSRDAEGGLLARPAEAEDEDGPVPIVSIRAQKSGGRTPPAGVGDRVLAR
VFPSEEEAGPAYTGRVMKVFEKRRRVVLGVFREMRDGTFRIEPVERRQPELTVDQEFRKD
AKNGDLVEVEPLSQGRYGLPRAKVLEVVGSLTSEKAVSMIAIHAHEIPHVFPESVLKEAE
AAKPATLEGREDWRKLPLVTIDPPDAKDHDDAVHAEPDQDEKNPGGVVVTVAIADVACYV
RPDTALDREALNRGNSVYFPDRVVPMLPERISNDLCSLREGEARPALAVRMRFSSDGRKI
GHSFHRVMMRSAARLSYEQAQAAVDGRPDDKTGPLLETVLRPLWNAYSVLKRGREAREPL
ELDLPERKIVLKSDGTVDRVVVPPRLDAHKLIEEFMIQANVAAAETLEAARQPLVYRVHD
APSLAKQESLREFLASLEISLAHGAALRPSQFNQILSRVEGTEQEQLVNEVVLRSQSQAI
YARENIGHFGLNLRRYAHFTSPIRRYADLIVHRALITARKLGPDGLREQDEERLEEISAL
ISATERRAMAAERETVDRLIAEHLAGRVNEEFSARISGVTKAGLFVLLPQYGADGFIPIS
SLGDDYYIFDEARHALVGQRSGSGYQLGDSVDVRLVEVAPLAGTMRFEMVSEPVRLPGSS
RSFHKTKRGLARKQKRTNRPAGRGRRR
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
ctgccctcgcgcgaagagcttctcgccttcatcactgaaaacccggaccgcgcgggaaaa
cgcgagatctccaaggcatttgggctgaagggcggcgaccggatctggctcaaggacctg
ctgcgcgagatgcaggacgaagggcttctcaagcagaagcgccgccgcctctcgcgcccg
ggcaccctgccccgcatggtggtgctcgacatcttctcgcgcgatgccgagggcggcctg
ctcgcccgtcctgcagaagcggaagatgaggacggccccgttccgatcgtctccatccgc
gcacagaagagcggcggacggacaccgccggcaggcgtcggcgaccgggtgctggcccgt
gtcttccccagcgaggaagaggccggccctgcctataccggccgcgtgatgaaggtcttc
gagaagcgccggcgcgtggtcctcggcgttttccgcgagatgcgcgacggcacgttccgc
atcgagccggtcgagcggcgccagccggagctcaccgtcgatcaggaattccgcaaagac
gcgaagaacggcgatctggtggaggtggagcctctgtcccagggacgctatggcctgccc
cgcgccaaggtcctcgaggtggtgggctcgctcacaagcgagaaggcggtttccatgatc
gccatccacgcgcacgagattccgcatgtctttcccgagagcgtgctgaaggaagccgag
gcggcaaagcccgccacgctcgagggacgcgaggactggcgcaagctgccgctcgtcacc
atcgatccgcccgacgccaaggaccacgacgacgcggttcatgccgagcccgatcaggac
gagaagaacccgggcggcgtggtggtcaccgtcgccatcgccgacgtcgcctgctacgtg
cggcccgacacggcgctcgaccgggaagctctcaacaggggcaattccgtctattttccc
gaccgcgtcgtgccgatgctgccagagcgcatctccaacgatctctgttcgctgcgcgaa
ggcgaggcgcgcccggcgctcgccgtgcgcatgcgcttctcatccgatggccgcaagatc
ggccacagcttccatcgtgtgatgatgcgctccgcggcgaggctttcctacgagcaggcg
caggcggcggtcgacggccggccggacgacaagaccgggccactgctcgaaaccgtgctc
cgcccgctctggaacgcctattcggtactgaagcgcgggcgcgaagcgcgcgagccgctg
gagctcgacctgcccgaacggaagatcgtgctcaagtccgacggcacggtggaccgcgtg
gtcgtgccgccgcggctcgacgcacacaagctcatcgaggagttcatgatccaggcgaat
gtggccgccgccgagacactcgaggccgcccgccagcctctggtctaccgcgtgcacgac
gccccctcgctcgccaagcaggaatcgctgcgcgagttcctggcatcgctggagatctcg
ctcgcccatggagcggcgctccggccctcgcagttcaaccagatcctttcccgcgtggaa
ggcaccgagcaggagcaactcgtcaacgaggtggtcctgcgctcgcagagccaagccatc
tatgcgcgggagaatatcggccatttcggcctcaatctgcgccgctatgcgcatttcacc
tcgccgatccgacgctatgcggacctgatcgtccaccgcgcccttatcacggccaggaag
ctcgggccggacggcctgcgcgagcaggacgaggagcggctggaggaaatctcggctctt
atctccgcaaccgaacgccgcgccatggccgccgaacgggagacggtggaccgcctgatc
gccgagcatcttgcaggccgcgtcaacgaggaattctccgcccgcatctccggtgtcacc
aaggccggcctcttcgtgctcctgcctcaatatggcgcagatggctttatccccatttcc
tcgttgggggacgattactatatcttcgatgaggcgcggcacgcacttgtcggccagcgc
agcggcagcggctatcagctcggcgacagcgtggatgtgcgcctggtggaagtagcgccg
cttgcggggaccatgcgcttcgaaatggtgagtgaacccgtccgcctgcccggttcgtcc
agatcgttccacaagacgaagcgcggattggcccggaagcagaagcgcacgaatcgcccc
gcgggacggggcaggagacgatga
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