Chelativorans sp. AA-79: PVE73_13100
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Entry
PVE73_13100 CDS
T09422
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
chea
Chelativorans sp. AA-79
Pathway
chea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVE73_13100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chea03019
]
PVE73_13100
03009 Ribosome biogenesis [BR:
chea03009
]
PVE73_13100
Enzymes [BR:
chea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PVE73_13100
Messenger RNA biogenesis [BR:
chea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVE73_13100
Ribosome biogenesis [BR:
chea03009
]
Prokaryotic type
rRNA processing factors
PVE73_13100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WEX07082
LinkDB
All DBs
Position
complement(2699762..2702368)
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AA seq
868 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVLRGNRIEEFDFESQDKKQLRGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQAILKAEAEEARAADDEAEENDAQSGRGKKRRRG
SRRSGKPDSRDEASVAADAAEAGESQPAQAEAVQEDVISETFPSENNGAEEANGSDEVDT
VGAEDALDEAESRRRHVRRSYKIQEVIKRRQILLVQVVKEERGSKGAALTTYLSLAGRYS
VLMPNTARGGGISRKITNVQDRKRLKDVVKSLDVPDGMGVILRTAGANRTKAEVKRDYEY
LMRLWERVRGLTLQSIAPALVYEEGSLIKRSVRDLYNKDIDEILVAGEEGYREAKDFMRM
LMPSHAKVVQPYRDTVPIFARNGIEAQLDKMLQPQVTLRSGGYIIINQTEALVAIDVNSG
RSTKEHSIEDTALQTNLEAAEEVSRQLRLRDLAGLIVIDFIDMEENRNNRAVEKRLKDCL
KNDRARIQVGRISHFGLLEMSRQRIRSSVLESTMQPCPHCGGTGHVRSDSSVALMVVRAI
EEYLLKDGRHDITVRTPTTTALYLLNHKRSTLVELELRFGVEITIATDEELGNQHYAIVK
GEPSTRAPAPKPAIQGTPEVELETEDEVPAEETADEPEERSIAAEEQGLPGRKRRRKRRR
RGGRDRASADHAAPQSAEEAEEGDEPSEAGEETEAPVAADAGEEEPRKKRHRGKRGGKRN
RREEGEEAAPEDAMTAPSGEEATEPAVAEPEPAPAVAEAAPTPEAPAEEAPAKKPRRKTR
AKKEAAVEEAPQAEIASPPDSETHEEPAPAAADATEAVPEEKEKKPASRRRTAAAADASE
EPEPVVSSTGEEGEAPRKTGWWQRKSFF
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgccaaacaaaatgctgatagacgcctcccacccggaggaaacgcgtgttgtcgtcctg
cgcggtaaccgcatcgaagaattcgatttcgaatcacaagacaagaagcagctcagggga
aacatctatcttgcacgggtcacccgtgtggagccctcgcttcaggcggcctttgtcgaa
tatggcggaaaccgccacggctttctcgccttcagcgagattcatcccgactattaccag
atcccggtcgccgaccgtcaggccatcctgaaggccgaggccgaggaggcccgcgcggcg
gatgacgaggccgaggagaacgacgcccagtccggacgcgggaagaagcgccgccgcggc
agccggcgcagcggaaagccggattcccgggatgaggcatcggtggcggcggatgccgct
gaagccggcgaaagccagccggcgcaggccgaggccgtgcaggaggacgtgatttccgag
accttcccgtccgagaacaatggcgccgaggaggcgaatggctcggacgaggtcgacacg
gttggcgccgaggacgcgctcgacgaggccgagagccgtcgccggcacgtgcgccgcagc
tacaagatccaggaagttatcaaacgccggcagatcctgctggttcaggtggtgaaggag
gagcgcggcagcaagggcgcggcactcaccacctatctctcgcttgccggccgctattcg
gtgctgatgccgaacacggcgcgcggcggcggcatttcccgcaagatcaccaatgtacag
gatcgcaagcggctcaaggacgtcgtcaagagcctcgacgtgccggacggcatgggcgtg
atcctgcgcactgcgggcgccaaccgcaccaaggccgaggtcaagcgcgactacgaatac
ctgatgcggctttgggagcgcgtgcgcggcctcacgctccagtccatcgcccctgccctc
gtctacgaggaaggcagcctgatcaagcgctccgttcgtgacctctacaacaaggacatc
gacgagattctcgtggccggcgaagaaggctatcgcgaggccaaggatttcatgcgcatg
ctgatgccgagccacgcgaaggtcgtgcagccctatcgcgatacggttccgatcttcgcg
cgaaacggcatcgaggcgcagttggacaagatgctgcagccccaggtgacgctcaggtca
ggcggctacatcatcatcaaccagaccgaagccctggtcgccattgacgtcaattccggc
cgctcgaccaaggagcattccatcgaggacaccgcgctccagaccaatctggaagcggcg
gaggaggtttcccggcagcttcgcctgcgcgaccttgccggtctcatcgtgatcgacttc
atcgacatggaggagaaccgcaacaaccgcgcggtggaaaaacgcctcaaggactgcctc
aagaacgaccgcgcccgcattcaggtcggccgtatctcgcatttcggcctgctcgaaatg
tcgcgccagcgcatccgctcgagcgttctggaaagcaccatgcagccctgtccgcattgc
ggcggtacgggccatgtgcgttcggattcctccgttgccctgatggtcgtccgggcaatc
gaggaatatctgctgaaggacggacgccacgacatcaccgtgcgcacgccgaccacgacc
gcgctctacctcttgaaccacaagcgctcgacactggtggaactcgagcttcggttcggt
gtggaaatcaccatcgccaccgacgaggaacttggcaaccagcactacgccattgtgaag
ggcgagccctccacccgtgcgcccgctccgaagcccgccatccagggcaccccggaagtc
gagctggaaacggaggacgaggtcccggcagaggaaacggcggatgaacccgaggagaga
tccatcgccgccgaagagcaaggccttcccgggcgcaagcgtcgccgcaagcgccgcagg
cgcggcggacgtgaccgcgcgagcgccgaccatgccgcaccgcagtccgccgaggaggcc
gaggaaggagacgagccgagcgaagccggagaggagaccgaagcaccggtcgcagccgat
gccggcgaggaagaaccgcgcaagaagcgccatcggggcaagcgcggaggcaagcgcaat
cgtcgcgaggaaggtgaagaggcggccccggaggatgccatgacggcaccatcgggcgag
gaagcgaccgaacccgcggtggccgaaccggaacccgctcccgccgtggcggaggccgcg
ccaactcccgaggctccggcagaagaggctccggccaagaagccgcgccgcaagacgcgt
gccaagaaggaagctgcagtcgaagaagcgccacaggcggagatcgcctctcctcccgac
tccgaaacgcatgaggaacccgcgcctgcggcggccgatgcgacggaggctgtgccggaa
gagaaggagaagaagcccgcctcgcgccgcaggacggcggcagcagccgatgcctcggag
gagccggagcccgtagtctcctcaacgggcgaagagggtgaagcgccgcgcaagaccggc
tggtggcagcgcaagagcttcttctaa
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