Chelativorans sp. AA-79: PVE73_14490
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Entry
PVE73_14490 CDS
T09422
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chea
Chelativorans sp. AA-79
Pathway
chea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVE73_14490 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chea03021
]
PVE73_14490 (rpoC)
03400 DNA repair and recombination proteins [BR:
chea03400
]
PVE73_14490 (rpoC)
Enzymes [BR:
chea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVE73_14490 (rpoC)
Transcription machinery [BR:
chea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVE73_14490 (rpoC)
DNA repair and recombination proteins [BR:
chea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVE73_14490 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
Phage_cement_4
Apocytochr_F_C
SACK1
Motif
Other DBs
NCBI-ProteinID:
WEX07337
LinkDB
All DBs
Position
complement(2976299..2980501)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEVMNLFNPQAPAQTFDSIRISLASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKENQLLSEEEYMMAIDEYGEDSFTA
MIGAEAIHHLLSSMELEKIAGDLRSELASTTSDLKQKKLLKRLKVVENFMESGNKPEWMV
MKIIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMVFADMGELHHALE
SDVVTLHTKIKGRFKTVDAEGNPVSKIYETTPGRMIIGELLPKNHNVPFDICNQELTKKN
ISRMIDTVYRHCGQKETVIFCDRVMALGFSHACRAGISFGKDDMLIPDTKVKLIAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMKRIKAIEFDDNGRQKPMNSIYM
MSHSGARGSPAQMRQLAGMRGLMARPDGSIIETPIISNFKEGLTVMEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVVTPDCGTEKGLTMQPIVDAGQVVASIGQRVLGRTA
LEDVVNPATGEVIVSAGRLIDERDVEAIEAAGIQTVRIRSALTCEMRTGVCAVCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDQSFLEASFEGTVKIRNRNV
VRNSDGHLVVMGRNMAVLIHDEAGAERASHRVAYGSRLYVDEGDKVKRGQRIAEWDPYTR
PMLTEVEGTVAFEDLVDGMSVQETTDESTGITKREVIDWRSTPRGSDLKPAITILDSKGK
VAKLARGGDARFLLSVETILSVDSGAKVRPGDVIARIPTESARTKDITGGLPRVAELFEA
RRPKDHAVIAEIDGTVRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDVIEK
GDFILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TAQGDSTYIPGDHVDQVEFDEVNDRLVEEGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKIDTLQGLKENVIVGRLIPAGTGGAMAQIRRIARSRDELILDERRKE
SGAETAEPMLTDMSRAGAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaacctgttcaaccctcaggcgccggcacagaccttcgattcc
atccggatttcgctggccagtcccgaaaagatcctgtcctggtcctacggcgagatcaag
aaaccggagacgatcaactaccgtaccttcaagccggagcgtgatggcctgttctgcgcg
cgcatctttggtcccatcaaggactacgagtgcctgtgcggcaagtacaagcgtatgaag
tacaagggcgtcatctgcgagaagtgcggcgtggaggtcacgctcagccgcgtgcgccgt
gagcgcatgggccacatcgagcttgccgccccggtcgcgcatatctggttcctgaagtcg
ctgccgagccgcatcggcacgctgctcgacatgacgctcaaggacatcgagcgggttctc
tatttcgagaactacatcgtgaccgagccgggcctgacggcgctgaaggaaaaccagctc
ctctctgaagaggagtacatgatggccatcgacgagtatggcgaggactccttcaccgcc
atgatcggcgcggaggcgatccatcacctgctgtccagcatggagctggagaagatcgcc
ggcgatctgcgctcggagttggcatcgaccacatcggacctgaagcagaagaagcttctg
aagcggctcaaggtggtcgagaacttcatggaatccggcaacaagccggagtggatggtc
atgaagatcataccggtcatcccgccggacctgcgcccgctggtgccgctcgacggcggc
cgtttcgcgacgtcggatctcaatgatctctaccgtcgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagttgcgcgcgccgggcatcatcatccgcaacgagaagcgcatg
ctgcaggaagccgtcgacgcgctgttcgacaatggccgccgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctctccgacatgctcaagggcaagcagggccgtttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgctccgtcatcgtgacgggc
cccgagctcaagctgcatcagtgcggcctgccgaagaagatggcgctcgagctcttcaag
cccttcatctatgcgcgccttgatgccaagggatactcctcgaccgtcaagcaggcgaag
aagctggtggagaaggagaagccggaagtctgggacatcctcgacgaggtgatccgcgag
catccggtgctgctcaatcgcgccccgacgctgcaccgcctgggaatccaggccttcgaa
cccatcctgatcgagggcaaggcgatccagcttcatccgctcgtctgcaccgccttcaac
gccgatttcgacggcgaccagatggccgtgcacgtgccgctgtcgctcgaggctcagctc
gaagcccgcgtgctcatgatgtcgaccaacaacatcctgcacccggcttccggcgcaccg
atcatcgtgccgtcgcaggacatggttctggggctctactacctgtccatcatgaaccag
aacgagccgggcgaggggatggtgttcgccgacatgggcgaattgcaccatgcgctggag
agcgacgtcgtcacgctgcacaccaagatcaagggccggttcaagaccgtggatgcggag
ggcaatcccgtctccaagatctacgagacgacgccgggccgcatgatcatcggcgagctt
ctgccgaagaaccacaatgtccccttcgacatctgcaatcaggagctgaccaagaagaac
atctcccggatgatcgacacggtctatcgccactgcgggcagaaagagacggtgatcttc
tgcgaccgcgtgatggcgctcggtttcagccatgcctgccgggccggtatctccttcggc
aaggacgacatgctgatccccgacacgaaggtgaagctgatcgcggagacggaggcgctc
gccaaggagtacgagcagcagtacaatgacggcctgatcacgcagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgagatgatgaagcgc
atcaaggcgatcgagttcgacgacaatggccgtcagaagccgatgaactcgatctacatg
atgtcgcattcgggcgcccgcggttcgccggcacagatgcgccagcttgccggcatgcgc
ggcctgatggcccgtccggacggctccatcatcgagacgccgatcatctcgaacttcaag
gaaggcctcaccgtgatggagtacttcaactccacccacggcgcgcgcaagggccttgcc
gacaccgcgctcaagacggcgaactcgggttacctgacgcggcgtctcgtcgacgtggcg
caggactgcatcgtggtcacgcccgactgcgggaccgagaaggggctgaccatgcagccc
atcgtggatgcgggccaggtcgtcgcctccatcggccagcgggtgctgggccgtaccgcg
cttgaggatgtggtgaatccggctacgggcgaggtgatcgtttcggccggccgcctcatc
gacgagcgcgacgtggaggcgatcgaggccgccggcatccagaccgtgcgcatccgctcc
gcacttacctgcgagatgcgcaccggtgtctgtgccgtctgctacgggcgcgatctggcg
cgcggcacgccggtcaatatcggcgaggccgtcggcgtcatcgccgcgcagtcgattggc
gagccgggaacccagctcaccatgcgcaccttccacatggggggcaccgcgcaggtggtt
gaccagtccttcctcgaggcatccttcgagggcacggtgaagatccgcaaccgcaacgtg
gtgcgcaactcggacggccacctggtcgtcatgggccgcaacatggcggtgctgatccat
gacgaggcgggcgccgagcgtgcctcgcaccgcgtcgcctacggctcgcgcctctatgtg
gacgagggcgacaaggtgaagcgcggccagcgcatcgccgaatgggatccgtacacccgc
ccgatgctgaccgaagtggaaggcacggtggccttcgaggatctggtggacggtatgtcg
gtgcaggagacgacggacgaatccaccggcatcaccaagcgcgaggtcatcgactggcgg
tccacgccgcgcggttccgacctcaagccggcgatcaccatcctcgattcgaagggcaag
gtggccaagctcgcgcgtggtggcgatgcccgcttcctgctctcggtggagacgatcctg
tcggtggactcgggcgccaaggtcaggccgggtgacgtcatcgcccgtatcccgaccgaa
agcgcacggacaaaggacatcaccggcggtctgccgcgtgtggccgagctcttcgaggcg
cggcgtccgaaggaccatgccgtcatcgccgagatcgacggcacggtgcgattcggccgc
gactacaagaacaagcgccgcatcatcatcgagccgcatgactcgacgctggagccggtg
gagtatctcatcccgaagggcaagccgttccatcttcaggacggcgacgtcatcgagaag
ggagacttcatcctcgacggcaaccccgcgccgcacgacatcctggcgatcaagggcgtg
gaggctctggcctcctacctcgtcaacgagatccaggaggtctaccggttgcagggcgtc
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
acggcccagggcgactcgacctacatccccggtgatcacgtggatcaggtcgagttcgac
gaggtcaacgatcgtctggtggaagagggtaagaagcctgcggagggccagccggttctg
ctcggcatcaccaaggcctcgctgcagacgccgtccttcatctccgccgcctccttccag
gagacgacgcgtgttctgaccgaggccgccgtggcgggcaagatcgacacgctgcagggg
ctgaaggagaatgtcatcgtcggccgcctcatcccggcgggcaccggcggcgccatggcg
cagatccgccgcatcgcccgctcgcgcgacgagctgatcctcgatgagcggcgcaaggag
tcgggcgccgagacggccgagccgatgctgaccgatatgagccgggcgggcgctgccgag
taa
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