Cohnella herbarum: HH215_00770
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Entry
HH215_00770 CDS
T08421
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cheb
Cohnella herbarum
Pathway
cheb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH215_00770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cheb03019
]
HH215_00770
03009 Ribosome biogenesis [BR:
cheb03009
]
HH215_00770
Enzymes [BR:
cheb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH215_00770
Messenger RNA biogenesis [BR:
cheb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH215_00770
Ribosome biogenesis [BR:
cheb03009
]
Prokaryotic type
rRNA helicases
HH215_00770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Helicase_RecD
AAA_19
ANF_receptor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJD81854
UniProt:
A0A7Z2VFC9
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All DBs
Position
165337..166977
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AA seq
546 aa
AA seq
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MSTFAEFGLEPDVLQAISEMGFEEATPIQAKAIPVAIAGRDMIGQAQTGTGKTAAFGIPL
ITKIAASEDRIVALIMAPTRELAIQVSEEIEKLGRFKGLRSLAIYGGQDISRQIRSLRRK
PQIIIGTPGRLLDHINRKTIRLDDVRSVVLDEADEMLDMGFMEDIQSILKLVPEERQTLL
FSATMPANIQKLAQQFLRNPEHVKVESKLLSAPLIQQYYVEIQERMKFDGLCRLLDMEPP
ELAIIFGRTKRRVAELSEALMKRGYACDGLHGDLSQNQRDTVMRKFRDGSIDILVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTSWSFVTARETDHLHFIEKVTR
HRISKKVLPTLSEAMEGKQKLMAERIMDTVRSEEEVNPFKWVAMQLLEQYDSVQLLAAAM
KLLTGDKKDVNIELTPEDPIRSKKRKFEGNRGGSGSYGSSSGRRYGGSGSSSGGQGGAWR
QGQGRSGDSRGGSSYSGGQRKPYSGGNRSSSTRDDSSYRDANRGPRPERREEYRGSRSQN
EDFVKI
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacatttgcagagtttggtttggagcctgatgttcttcaagccatatcggagatg
ggatttgaagaggcgaccccaatccaagcgaaagccattcccgttgccatagcaggcaga
gatatgatcgggcaggcccagacaggtacaggtaagacagcagcattcggtattccgctc
atcactaagattgcagcgagtgaagatcgcattgttgccctgatcatggccccgactcgg
gagctcgcgattcaggtatcggaagaaatcgagaagcttggacgtttcaagggacttcgt
tccttggctatatatggcggtcaagacatctcacgtcagatccggtcattgagacggaag
ccgcaaatcattatcggaacacccggtcgtttgttagaccacatcaaccgcaaaaccatt
cgcttggacgatgttcgttcggtcgtattggatgaagcggacgaaatgctggacatggga
ttcatggaggatatccaatccatcctgaagctcgttccggaagagcgtcaaacgttgttg
ttctcggcgacaatgccggcgaacatccagaagcttgcccagcaatttttgcgcaatcct
gagcatgtcaaagtcgaatcgaagctgcttagcgcgccgttgattcagcaatattacgtt
gaaattcaagaacgcatgaagtttgacggactttgccgcttgctcgacatggaaccgccg
gaattggctatcatcttcggtcgtacgaaacgccgtgttgccgaactttcggaagcgtta
atgaaacgcggatatgcatgcgatggcttgcacggcgacttgtcgcagaaccaacgcgat
accgtaatgcgcaagttccgcgacggcagcatcgatatccttgtcgcaaccgacgttgcg
gcgcgcggattggatgtatccggagttactcacgttattaacttcgacttgccgcaagat
ccggaaagctacgttcaccggatcggccgtaccggccgcgcgggtaaagaaggaacttcc
tggtctttcgtaaccgcacgcgaaacggatcacttgcatttcatcgagaaagtgacgcgt
catcggatttccaagaaagtattgccaactctgtcggaagcgatggaaggcaaacaaaag
ctaatggcggaacgtatcatggataccgttcgttcggaagaagaagtcaacccgttcaaa
tgggtggcgatgcagcttctcgagcaatatgattccgttcaactgttagcggcggcaatg
aaattgctgaccggcgacaagaaggacgtaaacatcgaactaacgcccgaggatccgatt
cgttccaagaagcgtaaattcgaaggtaaccgcggcggaagcggcagctatggcagcagc
agcggacgtcgttacggcggaagcggaagcagcagcggcggtcaaggcggcgcgtggcgt
caagggcaaggtcgcagcggcgattccagaggcggatccagctatagtggcgggcaacgt
aagccttacagtggcggcaatcgttccagcagtactcgtgatgatagcagctaccgcgat
gccaatcgcggaccgcgcccggaacgtcgggaagaatatcgcggaagtcgctctcagaac
gaagatttcgttaaaatctaa
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