Cohnella herbarum: HH215_12820
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Entry
HH215_12820 CDS
T08421
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cheb
Cohnella herbarum
Pathway
cheb03030
DNA replication
cheb03430
Mismatch repair
cheb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH215_12820
03430 Mismatch repair
HH215_12820
03440 Homologous recombination
HH215_12820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cheb03032
]
HH215_12820
03400 DNA repair and recombination proteins [BR:
cheb03400
]
HH215_12820
Enzymes [BR:
cheb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HH215_12820
DNA replication proteins [BR:
cheb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HH215_12820
DNA repair and recombination proteins [BR:
cheb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HH215_12820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF6282
DUF655
Motif
Other DBs
NCBI-ProteinID:
QJD83977
UniProt:
A0A7Z2ZMC5
LinkDB
All DBs
Position
complement(2881336..2884953)
Genome browser
AA seq
1205 aa
AA seq
DB search
MCDFVHLHVHSEYSLLDGAARIKEMAAKAAELGMTSLALTDHGVMYGTIPFYKACLEHGI
KPIIGMEAYITAGSRHDKQSRKEQPTYHLTLLAKNEIGYRNLMKLTSIGHLEGFYYRPRI
DFEALTAHAEGLVCLSGCMSSELSRQLMDDQYDAARATAIRYREVFGDDYYLEIQDHGIL
EQKKITANVIKLSEELGIPLAATNDSHYIDEDDHSLQDVLMCIGTGKTIDDPDRFKISTN
QLFLKSGEEMSALFRHVPDAIANTVKIADSCKLELEFGRHILPTFDPLPAGSTAAQYLKE
LCEKGLSERYAALKDWENGDYRKEAEERLRYELRVIGEMGFDDYFLIVWDFIRYAHENGI
VTGPGRGSSAGSLVAYVLKITDVDPLKYKLLFERFLNPERISMPDIDIDFSDERRDEVIR
YVVEKYGSEHVAQIITFGTLAARAAVRDVGRVLNLPYGDVDKTAKLIPGMPGMSIERAMR
DNSEFKALAEGGSSVAELIAMARRVEGMPRHASTHAAGVVISSDPLTDYVPLQEGTDGVP
LTQYSMENLEAVGLLKMDFLGLRTLSIIERSLVSIREQTGLDLRWEEVSYEDEPTYELMG
RGETTGIFQLESSGMRRVLKEMKPSSFEDIVSAVALYRPGPMEFIPQFIRAKHGLVEVEY
PHPKLEPILSDTYGIIVYQEQIMQIASTMAGFTLGQSDLLRRAVSKKKREVLDEQRQHFV
RGSLKLGYSEEEANSVYDMIVRFADYGFPRAHAAAYAVLAFRTAYLKAHYPVAFMASMLA
AVVGNQRKTAEYVDECRRMGIAVAKPDVNESGVLFTPVAAAEEGSLGSIRFGLAGVKNVG
TQAIESIMRERSGSPFESLSDFCRRVDPRVCNKRVIESLVQAGALESLPGHRSQQLAALE
PTLAAAAVWRKEREELQIELFDFAESPNWNVDLPIVPPYSQTQMLDLERELMGLYLSGHP
LDAFDGLMDELRLDRLVDIAESTDGATVFTAGMIVSLKPFVTRKGQAMVFLEIEDRIMGT
ELVAFPTVWAKAAATTKKGSLVFVRAKVQQGDEDYKLLADDILPLDAPDLKLQADRLRRI
GQASRSGGNYANRTANQSTGAKGTAASPASSGAKSANAPSGGVSSSVEGKPQRAYIRIDE
PHEQPATLIRLKLLLKAHPGELSTVLIYQRERRPVALSDEYKVHPTPELMAEIEKLLGEG
SFRVK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcgatttcgttcatcttcacgttcatagcgaatacagcctgcttgacggagcggcg
cgaatcaaggagatggcggccaaagcggctgaactcggcatgacttccctcgccttaacg
gatcacggcgtcatgtatggcaccattcctttctataaagcatgcctcgaacacggcatt
aagccgattatcggcatggaagcctatattacggcaggctcccggcatgacaagcaatcc
cgcaaggaacagccgacctatcatttaacgctgttagccaagaacgaaatcggttaccgg
aacttgatgaagctgacttccatcgggcatttggaaggtttctactatcgtccccgaatc
gatttcgaagcgttaacggctcatgccgaagggcttgtctgcttaagcggatgcatgagc
agcgagctttcccgccagcttatggacgatcagtacgacgcggcgagggcgacggcgatc
cgttaccgcgaagttttcggagacgactattacttggaaattcaggatcatggcattctc
gaacagaagaaaatcacggctaacgtgatcaagttgtccgaggagctgggaattccgtta
gccgcgactaacgattcgcattatatcgacgaagacgatcattccttgcaagacgtgctg
atgtgcatcggaaccggcaagacgatcgatgatcccgaccggtttaagatttctacgaat
caattgtttctcaagagcggggaagagatgtccgccctgttccgtcacgtccccgacgcg
attgcgaacacggtgaaaatcgcggatagttgcaagttagagctagaattcggacggcac
attttgccgacattcgatccgttgcccgcaggtagcacggcggcgcagtacttaaaggaa
ctttgcgagaaaggcttaagcgagcgatatgcggcactcaaggactgggaaaacggagat
taccgcaaggaagcggaggaacggcttcggtatgaactgcgcgtgatcggagagatggga
ttcgacgattatttcctgatcgtatgggatttcatccggtatgcgcacgagaacgggatc
gtcacgggacccggacgcggctcttcggcgggaagcttagtcgcgtatgtattgaagatt
accgatgtagaccccctcaagtataagctgctcttcgaaagattcctgaatcccgaacgg
ataagcatgcccgatatcgatatcgatttcagcgacgaacggcgcgacgaggtcattcgt
tatgtcgtcgagaagtatggatcggaacacgtcgcgcagatcattacgttcggaacgctg
gcagcccgcgcggcggttcgcgatgtaggcagagtgcttaatttgccctatggcgatgtg
gacaagacggctaaactcattccgggcatgccgggcatgtcgatcgaacgagcgatgcgg
gacaactcggaattcaaagcattggcggaaggaggatcgagcgtcgcggagctgatcgcg
atggcaagacgggtcgaaggcatgccgcggcatgcgtctacccatgcggcgggcgtcgtg
atctcgtccgatccgcttacggactacgtccctcttcaggaagggaccgatggcgtacct
ttgacgcaatattccatggaaaatctggaagccgtcgggctgttgaaaatggattttctc
gggctgcgcacgttgtccattattgaacggtcgctcgtttccattcgggagcaaaccggc
cttgacctccgatgggaggaagtttcctacgaggatgaaccgacgtacgaactgatggga
cgcggagaaacgacgggaattttccaattagaatcctccggtatgcgccgggtgttaaaa
gagatgaagccgtcctcgttcgaggatatcgtctccgcggtggcgctgtaccgtccggga
ccaatggaatttatcccgcaattcatacgggcgaagcatggcttggtcgaagtggaatat
ccgcatcccaagcttgagccgatcttatcggatacttacggaatcatcgtgtaccaagaa
cagatcatgcagatcgcttccacgatggccgggtttacgttagggcaatcggacttgttg
cggcgcgccgtcagcaagaagaaacgggaagtgctcgatgaacagcggcagcatttcgtg
cggggaagtttgaagctcggctactcggaagaagaagccaatagcgtgtacgatatgatc
gtgcgtttcgccgattatggcttccctcgggctcatgccgcggcatacgctgtactggcg
ttccgaaccgcgtatctcaaagcgcattacccggttgctttcatggcgtcgatgctagct
gcggtcgtaggcaatcaacgcaaaacggcggaatacgtggacgaatgccgccggatggga
atcgcggttgcgaagccggacgtcaacgaaagcggcgtgttgttcacgccggtcgcggct
gcggaagaagggagcctcggatcgatccgatttgggttagccggcgtgaagaacgtaggt
actcaagcgatcgagagcatcatgcgggagagaagcgggagtccgttcgagagtctaagc
gacttctgcaggcgcgtcgatccgcgagtatgcaacaagcgggtcattgaatcgcttgtc
caggcgggggcgctcgaatcgctcccgggacaccgctctcagcagctggcggcgctcgaa
ccgacgcttgcggccgccgcggtatggcgcaaagaacgagaagagcttcagatcgagctg
ttcgacttcgcggagtctccgaactggaacgtggatctgccaatcgttccgccttattcg
cagacgcaaatgctagatctcgagcgcgagctgatgggattatacttatccggtcatccg
ctcgacgcgttcgatggcttaatggatgagttacggctggatcgtctcgtggacatcgcg
gaatcaacggacggagcgactgtttttacggcgggaatgatcgtttccctgaaaccgttc
gttacccgcaaagggcaagcgatggtattcttggaaatcgaggaccggatcatgggtacg
gagctggtcgctttcccaaccgtctgggcgaaggccgccgccactacgaagaaaggctcg
ttagtgttcgtccgggcgaaggtgcaacaaggggacgaggattacaagctgttggcggac
gatattttacctttggacgctccggatttgaagttgcaagcggacaggcttcgacgtatc
gggcaagcttcacgatccgggggcaattatgccaataggacggcgaatcagtcgactggc
gcgaaaggaactgccgcatctccagcttcctctggggcaaagtcggcgaatgctccatcg
ggcggcgtatcgtcgtcggttgaaggcaagccgcaaagagcctatatccgcattgacgag
ccccatgagcaaccggctacgcttatccgtctcaaattgctgcttaaagcccatccgggg
gagctttccaccgtgcttatctatcagagggaacggcgccccgtcgcgctaagcgacgaa
tacaaagttcatcccacgccggaattaatggcggagatcgagaagctgctgggcgaggga
agtttccgcgtgaaatga
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