KEGG   Cohnella herbarum: HH215_16180
Entry
HH215_16180       CDS       T08421                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
cheb  Cohnella herbarum
Pathway
cheb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cheb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HH215_16180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cheb03019]
    HH215_16180
Enzymes [BR:cheb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     HH215_16180
Messenger RNA biogenesis [BR:cheb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HH215_16180
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 SidC_C AAA_19 CheB_methylest Utp25_C
Other DBs
NCBI-ProteinID: QJD84562
UniProt: A0A7Z2ZMZ4
LinkDB
Position
complement(3647137..3648282)
AA seq 381 aa
MTFNDLKLKPEILKALSKENYTAPTPIQEQAIPVVLAGRDLFGCAQTGTGKTAAFSLPIL
QLLSEQSSHGSRNRRIRSLILTPTRELALQISDNIQAYGHFTDLRCAAIVGGVSQKVQEK
SLEHGTDILIATPGRLIDLLNQKLVDLRHVQILVLDEADRMLDMGFIHDVKKIIATLPAK
KQTLFFSATMPPEISKLVKTLLVDPVKVEVTPASSTVERIEQSVYIVEKEMKLRLLNHLL
QDPSIGSALVFTRTKHGADRVVRALTKANISAQAIHGNKSQNSRQGALNNFRSGETRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGIAISFCDAEEAPYLKSI
EKMIGKSIPVVKDQSDPILIK
NT seq 1146 nt   +upstreamnt  +downstreamnt
atgactttcaacgatctaaagcttaaaccggaaatactcaaagcattaagcaaggaaaac
tatacagcgccgactcccatacaggagcaggcgattcccgtcgtgctggcgggtagggat
ttgttcggttgcgcgcaaaccggaacggggaaaaccgccgcgttttccttgcctatcctc
caactgctgagcgagcaatccagccacggctcgaggaaccgccgtattcgttcattgatt
ttgacgccgacgagagagctcgctctccagatttcggataacattcaagcgtatggacat
tttacggatttgcgttgcgcggcgatcgtgggcggggtctcgcagaaggtacaggaaaaa
tcgctggagcacggcacggatattctgatcgcgactccggggagactcatcgacttattg
aatcagaagctcgtggatttacggcatgttcaaatattagtgctggatgaagcggataga
atgctggatatgggctttattcatgacgtgaagaagattatagcgacattgcccgctaag
aaacaaactttgtttttttccgctacgatgcctcccgaaatctctaagctggtcaagacg
ctgctcgtggatccggtaaaagtcgaagtcacgccggcatcttccacagtggaaagaata
gagcaatcggtatatattgtagaaaaggaaatgaagctgcgattattgaatcatctgttg
caggatccttcgatcggttcggcgctcgtattcacccggactaaacacggagcggatcgc
gtcgtacgcgcattgaccaaagcgaatatttccgctcaagccatccatggaaataagtcg
caaaattcacgtcaaggcgctttgaataatttcaggagcggggaaacgcgggtgttggtg
gcgacggatatcgcggcaagaggcatcgatatcgatgaactttcccatgtgattaatttt
aaccttcccaatatcccggaaacctatgttcatcgaataggccgtaccggaagagcgggg
ctaagcggaatagcgatctctttctgcgatgcggaagaagctccgtatttgaaatccatc
gagaagatgatcggcaagtccattcccgtagtcaaagaccaatcagatccaatcttaatc
aaataa

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