Cohnella herbarum: HH215_17155
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Entry
HH215_17155 CDS
T08421
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cheb
Cohnella herbarum
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cheb03009
]
HH215_17155 (rlmD)
Enzymes [BR:
cheb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HH215_17155 (rlmD)
Ribosome biogenesis [BR:
cheb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HH215_17155 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
MTS
Cons_hypoth95
Methyltransf_12
N6_N4_Mtase
PCMT
TPMT
Ubie_methyltran
Methyltransf_23
N6_Mtase
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
QJD84743
UniProt:
A0A7Z2ZM68
LinkDB
All DBs
Position
complement(4015398..4017014)
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AA seq
538 aa
AA seq
DB search
MSGRNGKAVSGGSKRSGGKKLGGTGGQRRNARDTGSNGGTGDRSRRNAGSGESPRAIAGV
PVIVGQLVTCEIIGLTHDGDGVGRVDGYTLFIRDALPGEKVQAEVVSIGKSFGKARMTEL
LQGGSDSGSVGRVKPPCPIYDSCGGCQLQHLSYSEQLRWKRQHVVDNLARIGKLAVAGEV
GSGAAASKAATEGQQTVIVHPTIGMNAPWRYRNKAQVPIGFGEGGLIGGFYEQGSNDIVE
MDACLIQQEENEETVRAVKEAARMLDIGAYNRATGRGLLRHVVVRHARTTGQRMVVLVTN
GRDIPHAQEFAALIREKVPGVVSICQNVQTAATPVVFGEETRVLWGEDVIYDEIDGIQFA
ISPRSFFQVNPEQTVRLYGKAVEYAALTGNETVMDAYCGAGTISLFLAKHADKVYGVEIV
PEAIEDAKRNARLNGIHNAEFEVGPAEAIMPRWKDDGIVPDVIVVDPPRKGCDPSLIDTM
LELRPSRIVYVSCNPSTLARDLRLLEDGGYKTVEVQPVDMFPHTGHVECVVSLNQILN
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacggaatgggaaagcggttagcggcggcagcaagagaagcggcggaaagaag
ctcggtgggacgggcggacaacgccggaatgcgagagatacgggatcgaacgggggaaca
ggagaccggtctagaagaaatgccggtagtggcgaatcgcctcgggcaattgccggagtg
ccggtaatcgttggtcaacttgttacctgcgagattataggtttgacgcatgacggagac
ggggtaggccgggtcgatggctataccctttttattcgcgatgctctccccggcgagaag
gtgcaggcggaagtcgttagcatcggcaaatcgttcggcaaagctcggatgaccgagctt
cttcagggtggctcggattcgggttcggtcggtcgggtcaagcctccttgtcccatctat
gattcttgcggcggctgtcaattacagcacttgagttattccgaacagctccgctggaaa
cgacagcatgtggtcgataacttggcgcggatcgggaagcttgcggttgcgggagaggtt
gggagtggcgccgctgcttctaaggcggcaaccgaaggccaacaaaccgtcatcgttcac
ccgacgatcggcatgaacgccccatggcgttaccggaacaaggcgcaggttccgatcgga
ttcggagaaggcgggctgatcggcggcttctatgaacagggaagcaacgatatcgtagag
atggacgcttgcctcatccagcaggaagagaacgaagagaccgttcgggcggttaaggaa
gccgctcgaatgctagatatcggagcatataatcgcgcgaccggacggggtttgctgcgt
cacgtcgtcgttcgtcatgctcggacgaccggtcagcgcatggtagtgcttgtcacgaac
ggccgggatatcccgcacgctcaggagtttgcggcgcttattcgcgagaaggttccgggg
gtcgtgagcatctgccagaacgttcagacggcggcgacgccggtcgtgttcggggaagaa
acgcgtgtgttgtggggagaagacgtcatttacgacgagatcgacgggattcagttcgcg
atctctcctcgatcgttcttccaggtcaacccggagcagacggttcgattatatggcaaa
gccgtcgagtatgccgcgttgaccggtaacgagacagtcatggatgcgtattgcggcgca
ggaacgatttccctgttcctggcgaagcacgccgataaagtgtacggcgtggagatcgtt
cccgaggcaatcgaggatgctaagcgcaatgcgcggcttaatggcatccataatgccgag
ttcgaagtcggcccggcggaagcgatcatgcctcgctggaaagacgatggcatcgtgccc
gacgtcatcgtcgtcgatcctcctcgcaaaggatgcgatccttcgctgattgacacgatg
ctggaactccggccttcgcgaatcgtttatgtatcgtgcaatccgtcgactttggcacgg
gatttgcgattgctcgaggatgggggatacaaaaccgtcgaggttcagccggtggatatg
tttcctcatacggggcatgtggagtgcgtggtgtcattaaatcagattctcaattaa
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