Cohnella herbarum: HH215_20830
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Entry
HH215_20830 CDS
T08421
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cheb
Cohnella herbarum
Pathway
cheb03022
Basal transcription factors
cheb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HH215_20830
09124 Replication and repair
03420 Nucleotide excision repair
HH215_20830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cheb03021
]
HH215_20830
03036 Chromosome and associated proteins [BR:
cheb03036
]
HH215_20830
03400 DNA repair and recombination proteins [BR:
cheb03400
]
HH215_20830
Enzymes [BR:
cheb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HH215_20830
Transcription machinery [BR:
cheb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HH215_20830
Chromosome and associated proteins [BR:
cheb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HH215_20830
DNA repair and recombination proteins [BR:
cheb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HH215_20830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QJD85377
UniProt:
A0A7Z2VLP9
LinkDB
All DBs
Position
complement(4863540..4865822)
Genome browser
AA seq
760 aa
AA seq
DB search
MPDLIALSVRGLVEYVFRGGSLDSGFRTWSTLAEGTKAHQKIQKQYGESDRKEVYVSAEI
PYEELLFVVDGRCDGLLVGEDGGITIDEIKSTARDVGAMTAEDSYPVHWAQAKFYAYMFA
KDKGLDRIRVRLTYVQVDTEEQRRFEQEVGMEELERYVTDIVQSYAPYARLLERNRESRD
ISIAGLPFPFPQYREGQRKLVGSVYKSIDEGRKLFAKAPTGIGKTISTLYPTIKAIGLGK
VQHLFYLTARTITRLAAEDALSLMKAQGLHLRSVTITAKDKICFQDEVDCRPDKCPYADG
YYDRINGAILDLLGNETLMNREVIEKYARKHSVCPFEMSLDAAYGADAVICDYNYVFDPR
VSLKRMTGEHKHQTVLLVDEAHNLIDRAREMYSAALDKRNFMELEREFKGVRKEIHAAAK
AINKWFIACKKQGNGQVIVTKEKPDELLELVEEFTVQAERELAGSGSDMGNATLLETYFD
AMSFIRIGKLYDDSYITYTEMTRNDVRLKMFCLNPAYLLRQMGKGFRSHVFFSATLSPLN
YFMDMLGAEEEDYSVTLGSPFAKEQWEVSIVPLSTRYADRERTKARLVNELRRLTMERRG
NYLIFFPSYEYMNGVYGEFVAANEETLPTLLQTPDMSEEERERFLAAFSPDNDRTLIGFA
VMGGIFSEGIDLVGDRLSGVAVVGVGMPQIGLERNLIKGYFDEEGRNGFDYAYVYPGINK
VLQAGGRLIRSDKDRGVLALIDDRYTQPQYSRLLPEEWRG
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgccagatttgatagctctttccgtaaggggcttagtcgagtacgtttttcgcggtggc
agcctcgattccggatttcggacatggagtacccttgcggaaggtacgaaagcccatcag
aaaatacaaaagcagtacggcgagtcggatcggaaggaagtatacgtgagcgcggagatt
ccttacgaggaactccttttcgtcgtggacggacgctgcgatgggctgcttgtcggcgag
gatggcggcataacgatcgacgaaatcaaatcgacggcgcgagacgtgggagcgatgacg
gcggaggattcgtatcccgttcattgggcgcaggctaaattttacgcatacatgttcgcc
aaagataaaggcttggatcgcattcgagttaggctgacctatgttcaagtggatacggag
gagcaacgaagattcgagcaagaggtcggaatggaggaactggagcgctacgtcacggat
atcgtccaaagctatgctccttacgcgcggttgcttgaacgtaaccgggaatctagagac
ataagcatcgccggcttgccttttcctttccctcaataccgcgaaggacaaaggaagctt
gtcggctctgtgtacaagtcgatcgacgaagggcggaaattgttcgccaaagctccgacg
ggcatcgggaaaacgatatcgactttgtatccgacgattaaagcgatcggactgggcaag
gttcagcatctcttctatttaacggccaggacgataacgagattggctgcggaggatgcc
ttgtcgctcatgaaagctcaagggcttcatctgcgttccgtcacgattacggctaaggac
aagatctgttttcaagacgaagtagattgtcgaccggataagtgtccttacgccgacggt
tattatgatcggattaacggcgcgattctggatttgctgggcaacgaaacgctaatgaat
cgggaagttatcgagaaatacgctcgtaagcactccgtttgtccattcgagatgtccctg
gatgcggcatatggggcggatgcggttatttgcgactacaactacgtattcgatccgcga
gtttccttgaaaaggatgacgggagagcataagcatcagaccgttctattggtggacgag
gcgcataacttgatcgaccgagcaagggagatgtattccgccgcgttggataagagaaat
tttatggagctggagcgggagttcaaaggggttcgcaaagagattcatgccgccgccaaa
gcgatcaacaagtggtttatcgcatgcaagaaacaggggaatgggcaggttatcgttacg
aaagagaagccggacgagttgctggagttggtcgaggagtttaccgtgcaggcggagcgg
gagcttgcgggaagcggttcggatatgggaaacgcgacgttattggaaacgtacttcgac
gctatgagcttcattagaatcggcaagctttatgatgatagctatatcacctataccgag
atgacccgaaacgatgttcggttgaaaatgttttgtctgaacccggcctatctgctcaga
cagatggggaagggctttcgttcgcacgtgttcttctccgcgacgctgtccccgttaaac
tacttcatggacatgttaggagcggaggaagaggactattccgtgacgcttggatcgccc
ttcgctaaggaacagtgggaggtttcgatcgtgcctctgtctacgagatacgcggatcgg
gagcggacgaaggctcggctagtgaacgagctgcggcgattgacgatggagcggcgcggc
aattatctaatcttcttcccctcttacgagtacatgaacggcgtttacggggaatttgtc
gccgcgaatgaagaaacgctgcctactttgctgcagacgcccgatatgtcggaggaggaa
agggagcgatttctcgctgctttctccccggataacgaccggacgttgatcgggttcgcg
gtgatgggaggtattttctccgaagggatcgacctggtgggcgatcggttgagcggagtg
gcggtagtgggagtcggaatgccgcagatcggcttggagcggaatctgattaagggctat
ttcgacgaagaagggcgtaacggcttcgattacgcctacgtataccccggcatcaacaaa
gtgctgcaggcaggaggaaggctgatccgttcggataaagatcggggagtgctcgcgctc
atcgacgaccggtatacgcagccgcagtattcgcggttgctgccggaggagtggcggggg
tga
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