Cohnella herbarum: HH215_22625
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Entry
HH215_22625 CDS
T08421
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cheb
Cohnella herbarum
Pathway
cheb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH215_22625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cheb03019
]
HH215_22625
03009 Ribosome biogenesis [BR:
cheb03009
]
HH215_22625
Enzymes [BR:
cheb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH215_22625
Messenger RNA biogenesis [BR:
cheb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH215_22625
Ribosome biogenesis [BR:
cheb03009
]
Prokaryotic type
rRNA helicases
HH215_22625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Tuberin
Motif
Other DBs
NCBI-ProteinID:
QJD88291
UniProt:
A0A7Z2VSB5
LinkDB
All DBs
Position
complement(5307887..5309827)
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AA seq
646 aa
AA seq
DB search
MGIVTPTPVQEETIPIVKAGHDVISQAQTGTGKTLAFVLPMLDKIRTDVAQVQGLIVTPT
RELAIQITAEIKKLLTREDGIKVLAVYGGQDVEAQLHKLKGDMHIIVATPGRLLDHLGRE
TIKLDGVKMLVLDEADQMLHMGFLKEVEDILRHTPYKKQAMLFSATMPASIREMAGRILR
NPQHVTVKSERVTVKDIRQWVVETSDREKQATLVKLLEETQPYLSIIFCRTKRRANTLNV
ALQEMGYSSDELHGDLSQMKREQVMKRFRDARLQLLVATDVAARGLDVEGVTHVFNYDVP
LDVESYIHRIGRTGRAGEKGLAITLISPKDRRELADIEDGIQMIMERRSEEGAPLGGGGL
EGPRNSGGLGRAGSGGGRSRGSSAGAAKGRSIGGSKARGGDKAYGAAGGRGGDKRRGAAV
AKPGMGNRSSTGEWVDRGQSRDAEKAGRSSRSTVSAAAAASASDEAIGFTFSDRGERGGA
SGGRGRVGGGAGRKPAGDRGGFGRSAGAGRAGGSDRAVGGRAGFGRSADERGTGRPSGAG
GSSRRNSSERLAERAAENAKFDRNGESRGGGYGGGGRSGAGGFNTGGAKGGRKTEERGGS
FGGGRSSGARSGSGFGGGGAKGGSFKGPKGPSGGGGRGGRGSSRGR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcgtaacgccgacgccggtacaggaggaaacgattccgatcgtgaaggccgga
catgacgtgatcagccaagcgcagacgggtacggggaaaacgttggcgttcgtgttgccg
atgctggataagatcaggacggacgtggcgcaggtacaaggtttgatcgtgacgccaacg
cgggagctggcgattcagatcacggcggagatcaagaagctgctgacgcgcgaagacggg
atcaaagtgctggccgtatacggcggtcaagacgtagaggcacagctgcacaagctgaag
ggcgatatgcatatcatcgtcgcgactcccggcaggctgctcgatcatctgggcagggaa
acgattaagctggacggcgtgaaaatgctcgtattggacgaagcggatcagatgcttcat
atgggcttcctgaaggaagtcgaggacattctgcgtcatacgccttacaagaagcaggcg
atgctgttctccgctacgatgccggcttcgatccgcgagatggccggacggattctgcgg
aatccgcagcacgtaacggtgaagagcgagcgcgtgaccgtgaaggatattcggcaatgg
gtcgtggaaacgtcggatcgggagaagcaagcgacgttggtgaagctgctggaggagacc
cagccttatttgagcattattttctgccggacgaagcggcgggcgaatacgttaaacgtg
gctttgcaggaaatgggctactcttcggacgaactgcacggcgatctgtcgcaaatgaag
cgggagcaagtcatgaagcggttccgcgacgcgaggctgcagctattggtggcaacggac
gttgcggcgcgcgggttggacgtcgaaggcgtcacccacgtgttcaactacgacgttccg
ctagacgtggagagctatattcaccggattggccgtacggggcgcgcgggagaaaagggt
ctggcgatcacgctgatttctcctaaggatcgccgggagttggcggatatcgaagacggc
attcagatgatcatggaacgccggagcgaagaaggagcccctcttggcggcggcggactg
gaagggccgcggaacagcggcgggcttggccgtgcgggaagcggcggcggtcgttcgcgc
gggagcagcgcgggcgcggcgaaaggccgcagcataggaggcagtaaggctcgcggcggc
gataaagcatacggcgcggccggtggacgcggcggggacaagcggcgcggcgcggcggtt
gcgaagcccggcatgggcaaccgctcgagcacgggcgagtgggtcgatcgcgggcagagc
cgcgatgccgagaaagctgggcgcagcagcaggtctacggtaagcgcggcggcagcggct
tcggcatcggacgaagcgatcgggtttacgttcagcgatcgcggtgaacgcggcggagca
tccggcggcagaggcagagtcggcggcggggctgggcgtaagcctgctggcgatcgcggc
ggatttggccgctcggcgggagcgggtcgcgctggcggttccgatcgcgcggtaggcggg
cgcgccgggttcggacgttccgcggatgaacgcggaacgggacgccctagcggcgcgggc
gggtcgagcagacggaattcgtccgagcggctggcggaacgcgcggcggagaacgccaag
ttcgatcgcaatggcgaaagccgcggcggcggttatggcggcggcggtcgttccggagca
ggcgggtttaataccggcggagccaagggcggtcgcaagaccgaagagcgcggcggcagc
tttggcggcgggcgctcgtccggagcccggagcggcagcggattcggcggcggcggagcc
aaaggcggcagcttcaaaggcccgaaagggccttcgggcggcggcggtcgtggcggacgc
ggatcatcccgcggcagatag
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