Cohnella herbarum: HH215_25560
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Entry
HH215_25560 CDS
T08421
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cheb
Cohnella herbarum
Pathway
cheb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH215_25560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cheb03021
]
HH215_25560
03019 Messenger RNA biogenesis [BR:
cheb03019
]
HH215_25560
Transcription machinery [BR:
cheb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HH215_25560
Messenger RNA biogenesis [BR:
cheb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HH215_25560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA
OB_RNB
AAA_22
NB-ARC
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QJD88343
UniProt:
A0A7Z2ZQF1
LinkDB
All DBs
Position
5996865..5998181
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AA seq
438 aa
AA seq
DB search
MMADLEGLKLTELYKLAKQHQINNYAQMKKKELIIAILRAQAERSGLMFMEGVLEVLPEG
FGFLRPINYLPSPEDIYISASQIRKFDLRTGDLVSGKCRAPKESERYFGLLQVNAVNGVT
PETAAERLHFPALTPLYPQKKIKLETSPTHLSTRIMDLVAPVGLGQRGLIVAQPKAGKTL
LLKEIANSISINHPEIDLFVLLIDERPEEVTDMQRSVKGEVIASTFDEVPENHIKVAELV
LERALRLVEHKRDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGSARN
IEEGGSLTILATALVETGSRMDDIIYEEFKGTGNMELHLDRKLSERRIFPALDIRRSGTR
REELLLDKEALDKLWAIRKSMNDSMEFVEGFLKKLANTKTNQEFLDSLDTSGGPSAPSPS
SSGSGGGRRPTRSSPSRV
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgatggccgatttggaagggctgaagttgaccgagctctataagctcgcgaaacagcac
caaatcaataattacgcccagatgaagaagaaggaactgattatcgcgattttgcgggca
caagcggagcgtagcggtttgatgttcatggaaggcgtgctcgaggttttacctgaaggg
ttcgggtttctacggccgatcaactaccttccgagtcccgaagatatttatatttcggct
tcgcaaatccgcaagttcgatttgcggacgggggatcttgtctccggtaaatgccgggcg
ccgaaagaaagcgaacgatatttcggattgctgcaagttaatgccgtgaacggcgtcact
cccgaaaccgctgcagaacgtctgcattttcctgcacttaccccgctgtatccgcagaag
aagatcaagctcgaaacgtctcccacccatctatccactcgcattatggatcttgtagct
cccgtcggattaggacaacgtggactgatcgttgcgcagcctaaagcaggtaaaacgcta
ctgcttaaagagattgcgaatagcatatcgatcaatcaccccgaaatcgatttattcgtg
cttctgatcgacgagcgtccggaagaagtgacggatatgcagcgttcggtcaagggcgag
gttatcgcgtctactttcgatgaggtgcccgagaatcatatcaaggtcgcggagctggtg
ttggaacgggcattgcggcttgtcgagcacaagcgggacgtcgtgattctgctagacagc
atcacaaggcttgcgagggcatataacttagtcgttccaccgtccggacgtacgttatcc
gggggtatcgatccggcggcgttccatcgtccgaagcggtttttcggttcggcgcgtaac
atcgaggaaggcggaagcctgacgatactggccaccgcgctcgtggaaacgggttcgcgt
atggacgatattatttatgaagagtttaaagggacggggaacatggagctgcatctcgat
cgcaagctttcggaacgtcgcatattccctgctttggatattagaaggtccggcacgaga
cgggaagaattactgctcgacaaggaagcgctcgacaagctgtgggcgattcgcaagagc
atgaacgattccatggagttcgtggaaggcttcctcaagaagcttgccaatacgaagaca
aaccaagaatttctggattctctggatacgagcggggggccgagcgcgcctagcccgtca
tcgtcgggatccggtggaggacgccgcccgacgaggagcagcccctccagagtgtag
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