Cohnella herbarum: HH215_25890
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Entry
HH215_25890 CDS
T08421
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cheb
Cohnella herbarum
Pathway
cheb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH215_25890 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cheb03019
]
HH215_25890 (rnr)
03016 Transfer RNA biogenesis [BR:
cheb03016
]
HH215_25890 (rnr)
Enzymes [BR:
cheb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HH215_25890 (rnr)
Messenger RNA biogenesis [BR:
cheb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH215_25890 (rnr)
Transfer RNA biogenesis [BR:
cheb03016
]
Prokaryotic type
tRNA degradation factors
HH215_25890 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
QJD88349
UniProt:
A0A7Z2VSG7
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All DBs
Position
6059294..6062272
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AA seq
992 aa
AA seq
DB search
MCTEQELLDFMRETAYKPLTYKELEKHFGIEDAVEFKAFLRLLTEMEQDGKILLTRTDRY
GVPERMNLLRGRIQSHPKGFAFLIPDDKEHPDLYIHANDMKGTMNGDIVLARVSAKNENG
KLEGEIVRIVKRAVTQVVGVFQNHESYGFVVPDDKRINKDIFIRSEGFKGAVTGQKVVVN
ILTYPEGRSAAEGEIVEVLGHKDDPGVDILSIIRKHGLPESFPGDVLEEADAAPDTITEE
EIVQQGRRDLRDKVIVTIDGEDAKDLDDAVNVERLANGNLVLGVHIADVSYYVREKSKLD
EEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFEPGTMKQVRHDIFT
SVIRTTERMTYTNVRKILNDEDPEVTERYSELVDTFKLMRELAMGLRDMRMRRGAIDFEF
QEAKVIVDEQGKPIEIVKRERSIAEQIIEEFMLVANETVAEHFHWLKVPFIYRIHEEPSN
EKLMTFMQFAGNFGYAVRGKGNTVHPRALQTLLEEIQGTKEETVLSTMMLRSMKQAKYDA
ESLGHFGLAAEYYSHFTSPIRRYPDLAIHRVMREVLENGGTLPDNRFDSLNARMPDIASQ
SSERERVAVDAERDTEKLKKAEFMLDKIGEEFVGIISGVTSFGMFIELENTVEGLIRLSD
MTDDYYHFHELHMALIGERTSKIYRIGDEVKIRVGRVNMSDHTIDFEMVDMKSRSGSRVS
FVDARGPGGFDRKRKKLNAAGRFVGVGGGGDGGRGRGGRGGKPGGGAKGVRPDDRGASAG
DGGKFGGNAPSGKGGKRKKKPIGNGTLPVREPSAESIGIQATPVSAVVEAAGNAAGRTSK
RKGRDGDREGIVAEANGSSTSSGANRSTGGRAPGSNPRSESRPDSRAETRSDARSDSGTG
TSANGSGGSASAPARRGKLDMWGLPRSGNYKPIDDGTDGGMSSGLRKGRGGNGAGGASGG
NKRPPRPFTKAEASVPRSGGENKPSKRKKPKE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgtgcacagagcaggagctgctcgatttcatgcgggaaaccgcctataaaccgttaact
tataaagaattggaaaagcatttcggcatagaggatgccgttgaattcaaagctttcctt
cgcttgctgaccgagatggagcaagacggcaagattctgctaacccgtacggatcgctat
ggcgttccggaacggatgaatttgctgcggggacgaattcaatcccatccgaaaggtttt
gcgttcttgattccggatgacaaagagcatcccgatctctacattcatgccaacgacatg
aaggggacgatgaacggggatatcgtgctggcgcgtgtgtccgccaagaacgagaacggc
aagctggaaggcgagatcgttcgcatcgtgaagcgggcggtgacgcaggtcgtcggcgtt
ttccagaatcacgagagctacggcttcgttgtaccggacgacaaacggattaataaggat
atttttatccgcagcgaaggtttcaagggcgcggtgaccggacagaaggtcgtcgttaac
atccttacatatccggaaggacgttccgcggcggaaggcgagatcgtcgaagttctcggc
cacaaagatgatccgggagtcgatatcctcagcatcatccgcaagcatggcttgcctgaa
agtttcccgggcgacgtgctcgaggaagcggatgcggcacccgatacgattaccgaagag
gagatcgtgcaacaagggcgtcgcgacttacgcgataaagtcatcgtaacgattgacggc
gaagatgccaaagatctggacgatgcggttaacgtggaaagattggctaacggaaatctt
gtgctgggcgttcatatcgccgacgtgagctattacgtgcgcgagaaatcgaagctggat
gaagaagcttacaatcggggctgcagcgtctacctggtggacagggtaattccgatgctt
ccgcaccggttatccaacggaatttgttccttgaatccgcaggtggatcgactgacgatg
tcttgcgagatggaattcgagccggggacgatgaagcaggttcgccatgatattttcacg
agcgttatacggacgacggagagaatgacttatacgaacgtccgtaaaatattgaacgac
gaggatccggaagtgacggagcgatactccgagctggtggatacttttaagctgatgcgc
gagctggcaatggggcttcgcgatatgcggatgcgccgcggcgcgatcgatttcgaattc
caggaagcgaaggttatcgtcgacgaacagggcaagccgatcgagatcgtgaagcgggag
cgttcgatcgcggagcagatcatcgaagaattcatgctcgtggcgaacgagacggtagcg
gagcattttcactggttgaaggttccgtttatttatcggattcatgaggagccttctaac
gagaaactgatgacgttcatgcagttcgcgggcaatttcggttatgccgtgcgcggcaaa
ggaaataccgtgcatccgcgggcgcttcagacgttgctcgaagagattcaaggcacgaag
gaagaaaccgtgctcagcacgatgatgctgcgttcgatgaaacaagcgaagtacgacgcg
gaaagtctcggacatttcggattggctgcggaatattactctcactttacttcgccgatt
cgtcgttacccggatttggctatccatcgcgttatgcgcgaggtgctggagaacggcggc
actttgccggataatcgcttcgattcattgaacgcgcggatgccggatatcgcttcccaa
tcttcggagcgcgaacgcgtagcggtcgatgccgagcgggataccgagaagctgaagaag
gccgagttcatgctcgacaagatcggcgaagagttcgtcggcattattagcggcgtaaca
agcttcggcatgttcatcgagctggaaaatacagtggaaggcttaattcgtctaagcgat
atgacggacgattactaccatttccatgagcttcatatggcattgatcggcgagcgcacg
tcgaagatataccggatcggcgacgaggtgaaaatccgcgtcggccgcgtgaacatgagc
gaccatacgatcgatttcgagatggtcgacatgaagtcgcgtagcggcagccgcgtgagt
ttcgtcgacgcgcgcggaccgggcggtttcgaccggaagcggaagaagctgaacgcggcg
ggtcggttcgttggcgtcggcggtggcggcgacggaggccgcggtcgcggcgggcgcggc
ggtaagccgggcggcggcgctaaaggcgtgcggccggacgatcggggcgcgagcgccggc
gatggcggcaagttcggcggcaacgcgccgtcgggcaagggaggcaagcggaagaagaag
ccgatcggcaatggaacgttgccggtgcgggagccttctgcggagtcgattggcatacag
gcgacgcctgtaagtgcggttgtggaagcggcgggtaatgctgccggacgaacttcgaag
cgcaaaggtcgcgacggagatcgcgagggtatcgttgcggaagcgaacggttcgtcgacc
tcttcgggcgcgaatagatcgacaggcggtagagccccgggttcgaatccgagatcggaa
tcgagaccggattctagagcagaaacaagatcagatgcaagatcggattcgggtactggt
actagcgcgaacggttctggtggttccgcatcggctccggctagacgcggcaagctcgat
atgtggggacttccacgttccggtaactataagccaatcgacgatggtacggatggcggc
atgtcatccgggttgcgcaaaggtcgcggaggcaatggcgccggcggcgctagcggagga
aacaaacgtcctccaagaccgttcaccaaagcggaagcttcggtaccgagatcgggcgga
gagaataagccgagcaagcgtaaaaagcccaaagaataa
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