Cohnella herbarum: HH215_26940
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Entry
HH215_26940 CDS
T08421
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cheb
Cohnella herbarum
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cheb03016
]
HH215_26940
Enzymes [BR:
cheb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HH215_26940
Transfer RNA biogenesis [BR:
cheb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HH215_26940
Prokaryotic type
tRNA splicing ligases
HH215_26940
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QJD86439
UniProt:
A0A7Z2VNP7
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Position
6338798..6340024
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AA seq
408 aa
AA seq
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MAYQTIGGVRVWGNPDEGALAQARTCAETGNVVQALLMADHHKGYSQPIGGVIAYDGQIS
PSGVGYDIGCGNKAVRTNLNAADVKGRIGNIMNEIARKISFGIGRANSEKVDHALFDDPD
WSVYSAVGRQEHDKLKALARDQLGTVGSGNHFVDLFEEFGTGRLWIANHFGSRGFGHKTA
SGFLNLAAGREFLGKAPGETMDQPPTLLDMDSELGDMYFRAMKLAGRYAYAGRDYVIEQL
LAILGAESDFEVHNHHNFAWKETHNGKDAIVVRKGATPSAPGQTGFIGGSMGDISVIVRG
KDTAENRDSFYSTVHGAGRIMSRTQAAGKMNWKSRTRSGGAISPDRMAEAVRDYGVELRG
AGTDESPFVYRKLQEVLDAHAETIDVLHVLRPIGVCMAGADEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcataccaaaccatcggcggggttcgcgtctggggcaacccggacgaaggcgcgtta
gcgcaagctcggacctgcgcggaaaccggcaacgtggttcaagcgttgctaatggccgac
catcacaaaggctacagtcaaccgatcggaggtgttatcgcgtatgacgggcaaatttcc
ccttcgggcgtcggttacgatatcggatgcgggaacaaggcggtaaggacgaatttgaac
gccgccgacgtgaaaggccgaatcggcaatatcatgaacgaaatcgcgcggaaaatctcg
ttcggcatcggtcgcgccaatagcgagaaggtcgatcatgcgttattcgacgacccggat
tggagcgtctactcggcggtcggtcgccaagagcacgacaaactgaaggctttagcccgg
gatcagttggggactgtcggaagcgggaatcatttcgtggatttgttcgaagaattcgga
acgggccgcttgtggatcgccaaccatttcggaagccggggattcggacataagacggcg
agcgggtttctgaatctagccgccggaagagaatttctgggcaaagccccgggcgagacg
atggatcagccgccgacgttactggatatggacagcgagctgggggacatgtatttccgg
gcaatgaaacttgccggaagatatgcctatgcgggtcgcgactatgtcatcgaacaattg
ctggctattctcggtgccgaatcggatttcgaggttcacaaccatcacaactttgcgtgg
aaagagacgcataacggcaaagacgcaatcgtcgtgcgtaagggagcaacgccttcagcg
ccaggtcaaaccggattcatcggcggtagcatgggggatatctccgttatcgtacggggc
aaagataccgcggagaaccgcgattccttctatagcacggtacatggagccggacgcatc
atgagccggacgcaagccgccggcaagatgaattggaagtcccgcactcgttccggtgga
gcgatctcgccggatcgaatggcggaagccgttcgcgactacggcgtcgagctccgcgga
gcgggtaccgacgagagtccgttcgtataccgcaagctgcaagaggtgctggacgcgcat
gcggaaacgatcgacgtactgcatgtgttgcggccgatcggagtctgcatggccggggcc
gacgagtttgatccctataaggattaa
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