Cohnella herbarum: HH215_33745
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Entry
HH215_33745 CDS
T08421
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cheb
Cohnella herbarum
Pathway
cheb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH215_33745 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cheb03019
]
HH215_33745 (recQ)
03400 DNA repair and recombination proteins [BR:
cheb03400
]
HH215_33745 (recQ)
Enzymes [BR:
cheb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH215_33745 (recQ)
Messenger RNA biogenesis [BR:
cheb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH215_33745 (recQ)
DNA repair and recombination proteins [BR:
cheb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HH215_33745 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QJD87662
UniProt:
A0A7Z2VRD3
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All DBs
Position
8029353..8031173
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AA seq
606 aa
AA seq
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MNPAAIDALRTYYGYDRFRAGQSTLIEAILDGKDVLGIMPTGAGKSICYQIPAILLPGVT
LVISPLISLMKDQVDSLNTAGIEATYINSSLSVKETNERMRDVAAGHYKLLYVAPERLES
EYFRELIRGLEVPLIAVDEAHCVSQWGHDFRPSYMTIVRLLRDIEPRPVMAAFTATATDV
VKEDIVERLKLREPARVTTGYARSNLAMSVVRNADKRDYVARYVKEHSDQAGIIYASTRR
EVESVYSFVHSLGVPVGKYHAGLSEEDRARTQDAFQRDDVQIIVATNAFGMGIDKSNVRF
VIHNNMPKNLEAYYQEAGRAGRDGDPGECVLLFSPQDVVTQKFFIDQSEASDERKRNDYR
LLNDMVQYSHTGDCLQLTIVRYFGEENGEPCGTCANCTDTREQKDVTEDAKMIFACISEM
KQRFGVTLTAKVLRGANDAKIRQFNFDRLRSYGRLKHMAEKPLVQLIHALVADGYLRMSD
TAYPVVQLMEPVLEVMRGESRVYHKAEPEAPPVSRTSGRSGSSRSGGSSAPVANAELFNA
LRQLRKRIADGEGLPPFVIFHDATLREMCEAMPANERAMRSVKGVGAAKYEKYGQAFLDL
IRHHSD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagcggcaattgatgcattacgaacgtactacgggtatgaccgctttcgcgcg
ggacagtcgacgttgatcgaagccatattggacggcaaagacgtgctcggcattatgccg
acgggagcgggaaagtcgatctgttatcagataccggcgatcttgcttccgggggtgacg
ttggtcatttccccgttgatttccctcatgaaggatcaagtcgattctttgaacacggcg
ggcatcgaagctacttatatcaatagctcgctctccgtgaaagagacgaacgagagaatg
cgggacgtggcggccggtcattacaagctgctgtacgtagcgccggaaaggttggaatcc
gagtatttccgggagcttatccgagggttggaagtgccgctgatcgcggtggacgaggcg
cactgcgtatcccagtggggacatgatttccgtccgagctatatgacgatcgtgcggttg
ctgcgggatatcgagccgcgcccggtaatggcggcgttcacggcgaccgcgacggacgtc
gtcaaggaagatatcgtggagcggcttaaactgcgcgaaccggcaagggtgacgacgggt
tacgcccggagcaatctggcgatgtcggtcgtccgcaatgcggacaagcgggattatgtc
gctagatacgtgaaggagcattcggaccaagccgggattatttatgcctcgacccgtcga
gaggtggagagcgtctactcgttcgttcattcgctaggcgtaccggtcggcaaatatcat
gccggactaagcgaagaggaccgcgcgcgtactcaggatgcttttcagcgggacgatgtg
caaattatcgtggcgacgaacgctttcggcatggggatcgacaagtcgaacgttcgcttc
gttatccataacaatatgccgaaaaacttggaagcctattatcaggaagcggggcgcgcc
ggacgcgacggcgatccgggagagtgcgtgttgttattttcgcctcaggacgtcgtgact
caaaagttttttatcgatcaaagcgaggcaagcgatgagagaaaacggaacgattatcgt
ttgttgaacgatatggtgcaatattcgcatacgggagattgcctacagctgacgatcgtc
cgatatttcggcgaggagaacggggaaccatgcgggacttgcgccaattgcaccgatacg
cgtgaacagaaagacgtgaccgaggatgcgaagatgattttcgcctgcatctcggagatg
aagcaacgcttcggcgttacgctaacggccaaggtgcttcggggagctaacgacgcgaag
atcaggcagttcaacttcgatcgcctaagatcttacggcagattaaagcatatggcagag
aaaccgctcgtgcagctcattcacgcgcttgtggccgacggatatttgcgaatgtcggat
accgcttatccggtcgttcagttaatggagcctgtcctagaagtcatgcgaggagagtct
cgcgtgtatcacaaggcagaaccggaagcgcctccggtatcgcggacaagcggaagatcc
ggttcttcccgcagcggcggctcttcggcgccggtggcgaacgcggagttgttcaacgcc
ttgcgccagcttcgtaagcggatcgccgatggggaagggctgccgcctttcgttattttc
cacgatgcgacccttcgggagatgtgcgaggcgatgcctgcaaacgagagagcgatgcgt
tcggttaaaggcgtcggagcggctaaatacgagaagtatggacaagcgtttttggatctc
attagacatcattcggattga
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