Corynebacterium heidelbergense: CHEID_05725
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Entry
CHEID_05725 CDS
T08908
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
chei
Corynebacterium heidelbergense
Brite
KEGG Orthology (KO) [BR:
chei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chei03019
]
CHEID_05725 (hrpB)
Enzymes [BR:
chei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHEID_05725 (hrpB)
Messenger RNA biogenesis [BR:
chei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CHEID_05725 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
HA2_N
nSTAND3
ResIII
NACHT
SRP54
SLFN-g3_helicase
T2SSE
RecG_N
Motif
Other DBs
NCBI-ProteinID:
WCZ36682
LinkDB
All DBs
Position
1268558..1272655
Genome browser
AA seq
1365 aa
AA seq
DB search
MAAIRDHQVVIVAGETGSGKTTQIPKMCLDLGRGRRQVIGHTQPRRLAARSVAERIAEEM
GTSVGEPGSSVGYKIRFDDTISQSTAVKLMTDGVLLNEIQRDRTLKAYDTIIIDEAHERS
LNIDFLLGYLKQLLPRRPDLKIIITSATIDPESFAQHFSDSRGNPAPIIEVSGRTFPVEI
RYRPLTTEIIEDATSTVRTVERDPLEALTSACRELMSEGDGDILCFFSGEREIRDAAEAL
EGEFNGGGGRPGSKRVDILPLFGRLSNQEQHRVFHPGGRRRIVLATNIAETSLTVPGIHY
VVDTGLARISRYSSRTKVQRLPVEEISQASAKQRSGRCGRIADGIAIRLYSQEDFEARPE
FTDPEILRTHLASVILAMAALGLGDIYDFPFVLPPDKRAVKDGIALLVELGALDEDKGHR
KRNATGDDGSATGSSAAGNSGYSLTPVGRDLARIPADPRLARMLVAAHAAGVVDMLAVLV
AALSIQDIRERPLEHQARADQLHARFASDSDFTSIILLWNYIQTRRKELSGNQFRKLCRE
EFLHYVRAREWMDLVRQFLSIVQDLGWEISYIPHVRELVFDPTALNEDVLHQCVLSGMVS
HIGMREGNSRQFLGTRNSHFVIHPSSQLAKKPPQWIIAAELVETSQVFARTVGPCKPEWV
EQVAGHMTKATYSEPYWSAKRSAAMIHEKIMLLGLPIIADRVVSLSKVDRPQAREMFIRR
ALVEGDWRTHHRFFAHNQEVLAEASQLEDKARRRNIVVDDETLYNFYDARLPESVVSARH
FDSWWKKARHGHPHLLDFDLDALIESPEAAAAAGEFPDTWIQGSLRFDLSYVFEPGRPDD
GITMRVPLPLLATVDEEQAQWLVAGMREELCVALIRSLPKALRKSVVPASNFAAAALGRM
SAFDGPIDRALADALRALGGTGIDAEDFDWSKVPPHLRVNVAAIDRHGKVVAASRDISQL
KADLSGQITQAIAKASAQGRMRGAGHGAAGSDGRTGGQGAQDTRNGHGAAAKSGSSGGRG
TGSKGRRGAASSAGMGGDELTRAAKWTAEGIGVIPEHIETIIDGQPVQAYPAILAQDGAM
IVRAFPTKQAAAAQQFKTVLDLMVTAVRVQPQQMIKGLPLRQRVAMGTYASRVGTDSAPS
SGRSNGGSKRTGASNKTGGCKRNGGAQQTGVAQGVEGLVADCVAVACRDILTSIGPVLRD
PDEADRAIEQARQKVPGMVRQMVVAVAPAILAVEDLRAELREWSGPIIKDIQQQLGFYLP
QHAVARHGVGHLKHVPRYVAAVKQRLEDLEAQPDRDEDLEEQVRQAFEYYRATVDRLPSA
RAHSPQLKEVRWMIEELRVSLFAQNLGTTRSVSVARIRKALEKIR
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcggccattcgcgatcatcaggtggtgattgtcgcgggcgaaacggggtccgggaag
acgacgcagatacccaagatgtgcctcgatctcggccggggtcggcgacaggttatcgga
cacacccagccgcggcgccttgcagcccgctccgttgccgaacgaatcgcggaggaaatg
ggcacgtcggtgggcgagcccggcagttcggtgggctataagatccggtttgacgatact
attagtcaatccaccgccgtgaaactcatgaccgatggtgttttgctcaatgagattcag
cgggataggacgctcaaagcctacgacaccatcattatcgacgaggctcacgaacgcagt
ctcaatatcgattttctcctgggctacctcaagcaactgctgccgcgccgcccggacctt
aagatcatcatcacctccgccaccatcgacccggagagtttcgcccagcacttcagcgat
tcccggggcaatccggcgcccatcatcgaggtctccggccgcacctttccggtggaaatc
cggtatcgtccgctcaccaccgaaatcattgaagacgccacgtccaccgtgcgcaccgtc
gagcgcgatcccctggaggccctcacctccgcctgccgggaactcatgagcgagggcgac
ggggacatcctctgtttcttctccggcgagcgggaaatcagggatgctgcagaagcgcta
gaaggcgagttcaatggtggcgggggtcgccccgggtccaagcgcgtggacatcttgccc
ctattcgggcggctctccaaccaggagcagcaccgcgtcttccacccgggtgggcgtcgg
cgcatcgtgttggcgactaacatcgcagagacttctctcaccgtccccgggattcactac
gtggtggacaccggtctggcgcgaatttctcggtactccagccgaacgaaagtccagcgc
ttgcccgtggaggagatctctcaggccagcgcaaaacagcgatcgggccggtgcggccgc
atcgccgacggcattgctattcgcctgtactcccaggaggatttcgaagcccggccggaa
ttcaccgatccggagattctgcgaacgcacctcgcaagcgtcatcctcgctatggctgca
ttgggtctgggagatatctacgatttcccgtttgtcctaccgcccgacaagcgtgccgtg
aaagacggcatcgcgctgctcgtggagctaggagcccttgacgaggacaagggtcaccgc
aagcggaacgccaccggcgacgacggctcggcaaccgggtcgagcgcggctgggaattcc
ggttacagcttgactccggtggggcgtgacctcgcccggattcccgccgacccgcgcctg
gcccgcatgctagtggcggcccacgctgcgggggtagtagacatgctggcggtgcttgtg
gcggctttgtccatccaggacattcgggagcgcccgctagaacaccaggcccgggcggac
caactgcatgcgcgttttgccagcgattcggatttcacgtcaattatcctactgtggaac
tacatccaaacccggcgcaaggagttgagcggcaaccagtttcggaaactctgccgtgag
gaatttctgcactacgttcgagcccgggaatggatggatctggtccgccaatttctcagc
atcgtgcaggacctcggctgggagatttcttacatcccccacgtgcgtgagctggttttc
gaccccaccgccctcaacgaggatgtactgcaccagtgcgttctctccggaatggttagc
catatcggaatgcgtgagggtaactcgcgtcaattcctggggacccgaaactctcacttc
gtcatccacccctcctcgcagttggccaagaaaccgccacagtggattatcgccgcagag
ttggtggaaacatcccaggtgttcgcacgaaccgtcggcccctgcaagccggagtgggtg
gagcaggtcgcaggccacatgaccaaagccacctactcggaaccctattggtccgcgaaa
cgctcggcagccatgatccacgagaaaatcatgctgctgggattgcccatcatcgcggat
cgggtggtctccctaagcaaggtggaccggccccaggcccgggagatgttcatccgccgg
gctttggtggagggcgactggcgtacccaccaccgcttcttcgcgcacaaccaggaagtt
ctggccgaagcctcacaactggaggacaaggcccgtcggcggaacatcgtggtagacgac
gaaaccctctacaacttctacgatgctcgcctgccggagtccgtcgtcagcgcccggcat
ttcgatagctggtggaaaaaggcccgtcacgggcatccccacctgttggacttcgaccta
gatgcccttatcgaatccccggaagcagccgcggcagccggtgagttcccggacacgtgg
atccagggctccctgcgctttgacctgtcctacgtcttcgaaccgggccgtccggatgat
ggcatcaccatgcgcgtgccgctccccttgctggctacggtggacgaggaacaggcccaa
tggttggtcgcaggaatgcgggaggaattgtgcgtagctctcattcgttccctccccaag
gccctgcgcaaatcggttgtgccggcctccaacttcgccgcagcggcgctcggcaggatg
agcgccttcgacggccccatcgaccgcgctctggcagacgcattgagggccttaggtgga
accgggatcgacgcggaggatttcgactggtcaaaggtcccgcctcatctacgggtgaac
gttgcggccattgatcgccacggcaaggtggtggccgcgagccgagatatctcccaactc
aaggcggacctttcgggccagatcactcaggccatcgccaaggccagtgcccaggggcga
atgcgcggagccgggcacggtgctgcggggtcggacggacggaccggcggccagggggcg
caggacacacgcaacgggcacggtgctgcggccaagtccggctcctctgggggccgaggc
acgggctccaaggggcggcggggtgccgcatcgtccgctggcatgggcggtgacgagctg
acgcgagccgctaagtggacggcggagggtattggcgtcattccggaacatatcgagacc
atcattgacggccagccggtccaggcctaccccgccatcttggcgcaggacggcgcaatg
atcgtccgggcatttccgacgaaacaggcagcggcggcgcagcagttcaagacggtgctg
gatctcatggtcactgcagtacgggtgcagccgcagcagatgatcaaggggttacccctg
cgccagcgcgtcgcgatggggacctatgccagccgcgtgggcaccgattccgccccgagc
tccgggagatcgaacggcgggtcgaaacgaaccggggcatcgaacaagaccgggggctgt
aagcggaatggtggggcgcagcagaccggggtggcccagggagtagaggggcttgtcgcc
gactgcgtggctgtggcctgtcgggacatcctcacctcgattggccccgtgttgcgcgat
ccggatgaggcggaccgtgcgatcgagcaggccaggcagaaggtgccggggatggtccgg
cagatggtggttgctgtggcgcccgccattctcgccgtggaggacctccgcgcggagttg
cgggaatggtctgggccgatcatcaaggacattcagcagcagctcgggttttatctgcct
caacacgcggtggcgaggcatggcgtggggcacctgaagcatgtgccgcggtatgttgcg
gccgtcaagcagcggttggaggacctcgaagcgcagcctgaccgcgatgaggacctggag
gaacaggtgcgccaggctttcgagtactaccgggcgactgtcgatcggctaccgtctgcg
cgggctcattcgccccagctcaaggaggtgcggtggatgattgaggagctgcgtgtgagc
ctgttcgcccagaaccttggcacgacccgttcggtatccgtggcgcggatccggaaggca
ttggagaagatccgctag
DBGET
integrated database retrieval system
