Corynebacterium heidelbergense: CHEID_06945
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Entry
CHEID_06945 CDS
T08908
Symbol
deaD1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chei
Corynebacterium heidelbergense
Pathway
chei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHEID_06945 (deaD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chei03019
]
CHEID_06945 (deaD1)
03009 Ribosome biogenesis [BR:
chei03009
]
CHEID_06945 (deaD1)
Enzymes [BR:
chei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHEID_06945 (deaD1)
Messenger RNA biogenesis [BR:
chei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHEID_06945 (deaD1)
Ribosome biogenesis [BR:
chei03009
]
Prokaryotic type
rRNA helicases
CHEID_06945 (deaD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
WCZ36922
LinkDB
All DBs
Position
complement(1561008..1563338)
Genome browser
AA seq
776 aa
AA seq
DB search
MSDTDNVAGDVNKPVNDETVVSQENLQGDNNASDALSVSDVLGQGPSAAEQSEKTAEEKQ
EDNQQHGPQAESTDSQPQAEPADSEETGTAGAEAAENADSVSKGSEQGEDKPESHGFDGL
GLPERVLAAVKKVGYEQPSPIQAATIPVLMEGQDVVGLAQTGTGKTAAFALPVLSQIDPS
RRHPQALVLAPTRELALQVAEAFQSFSEHLGGIHVLPIYGGQAYGVQLAGLRRGAHVVVG
TPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILADTPDTKQVALFSATMP
ATIRRLSKQYLNDPQEITVKATQRTSENIEQDYLLVNHRNKLDALTRILEVTEFEAMIMF
VRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV
DRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIERATRSRLNEI
ELPTVDSVNEARKDKFREALTESLSDPQISVFRSLVKEYAQSNEVPLEDVAAALAAQLQS
GEDFLMKEPPRQERRERRNRDDRYGDNNRSGGGAYRSHEERFGNRRAPRVTDRGGKELEV
YRLAVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFADHSLVELPADLPEEVFRALDQT
RVSGQLINIEPDPGAPAGRPAHYRKDRDDRRGGRGGDRGGDRRGAGGGRYDRDDRGGQHR
GGGDFRRGHRDDREGFERGGYDRGDRGGFRRNDRDNRGGGFNRRGGNRDGYRGGDR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatactgacaacgtcgccggagacgtcaataagccggtcaacgacgaaaccgtg
gtatctcaggaaaatctgcaaggggacaacaacgccagcgatgcgctgagcgtgtccgat
gtgttgggccagggcccgagtgcggcagaacagtctgagaagaccgccgaagaaaagcaa
gaagacaaccaacaacacggcccgcaggcggagtccaccgactcccagccgcaggccgaa
cccgccgactccgaggagaccggcaccgccggtgctgaggcggccgaaaacgccgactcc
gtgtcgaagggctcggagcagggggaggacaagcccgaaagccacggcttcgacggcctg
ggcctgcccgagcgcgtgctcgcggcggtgaagaaggtcggctacgagcagccttccccc
atccaggcagcgactatccccgtcctcatggagggccaggatgtcgtgggcctcgcccag
acgggtaccggtaagacggccgcattcgcgctgccagttctttcccagatcgatccgtcc
cgccgccacccccaggccctggtgctagcccccacccgcgagctcgcgctgcaggtggcc
gaggccttccagtccttctcggagcacctgggcggcatccacgtgctgccgatctacggc
ggtcaggcctatggggtccagctcgccgggctgcgccgcggtgcccacgtcgtggtgggc
acccccggccgcgtcatcgaccacctggagaagggcagcctggacatctccgagctgcgc
ttcatggtgctggacgaggccgacgagatgctcaacatgggcttccaagaggatgtggaa
cgcatcctcgccgacaccccggacaccaagcaggtggccctcttctccgcgacgatgccc
gccaccatccggcggctgtccaagcagtacctcaacgatccgcaggaaatcacggtcaag
gcgacccagcggaccagcgagaacatcgagcaggattacctgctggtcaaccaccgcaac
aagttggacgcccttacccggatcctggaggtcacggagttcgaggcgatgatcatgttc
gttcggacgaagaacgagaccgaggagctggccgaacgcctgcgtgcccgcggattcaat
gccgcggccatcaacggcgacatcgcccaggcccagcgtgagcggacagtggaccagctc
aaggatggccggttggacattttggtcgccacggatgtggcggcgcgcgggttggatgtg
gatcgcatcacccacgtgttcaactacgacattccgcacgacacggaaagctacgtgcac
cgtatcgggcgaacggggcgcgccgggcgctccggcagggcgatcctgttcgtcaccccc
cgggaacgtcgactgctcaaggccatcgaacgcgccacccggtcgcgcttgaacgagatc
gagctgcccaccgtggactcggtcaacgaggcccgcaaggacaagtttcgggaggcgctg
accgaaagcctgagtgacccccagatctccgtgttccgctcgctggtcaaggagtacgcc
cagagcaacgaggtacccctggaggacgtggccgcggccctggctgcccaactccagtcc
ggcgaggatttcctcatgaaggagcccccgcgccaggaacgccgggagcgccggaaccgg
gatgaccggtacggggataacaaccgtagcgggggcggcgcctaccgttcccacgaggag
cgcttcggtaaccgccgtgcgccgcgcgtcacggatcgcggtggcaaggagctggaggtc
taccgtcttgcggttggccaccggcagcgcgtccggccgggtgccatcgtgggcgccctg
gccaacgagggcggcctgaactcccgagatttcggccggatcagcatcttcgccgatcac
tccctcgtggagctgcccgcggatctgccagaagaggttttccgcgcgctggaccagacc
cgagtctccggtcaattgatcaatatcgagccggatccgggtgccccggccgggcgcccc
gcccactaccgcaaggaccgcgatgatcgccgcgggggccgaggcggcgaccgtggtggg
gaccgccgcggtgccggtggaggacgctatgaccgggatgaccgcggtggacagcaccgt
ggcggcggggacttccgccggggtcaccgggacgatcgcgaaggtttcgagcgcggcggc
tacgaccgcggggatcgcggtggcttccgtcgaaacgaccgggataaccgtggtggcgga
ttcaaccgccgcggcggcaaccgggatggttaccgcggcggggaccgctag
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