Chelatococcus sp. CO-6: AL346_18795
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Entry
AL346_18795 CDS
T04040
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chel
Chelatococcus sp. CO-6
Pathway
chel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL346_18795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chel03400
]
AL346_18795
Enzymes [BR:
chel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL346_18795
DNA repair and recombination proteins [BR:
chel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL346_18795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
AAA_22
SecA_DEAD
AAA_25
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALA19081
LinkDB
All DBs
Position
complement(4015553..4019074)
Genome browser
AA seq
1173 aa
AA seq
DB search
MQLKRAIEALKRAESLTVASVPDGLDAIVAADLARALAKGEERAATLVHVARDGQRMAAM
ETALSFVAPEIDVLSFPAWDCQPYDRVSPNAAVTARRMTTLARLARTRAGEDKPRILLTT
VNAILQRVPPIARIATETLSAAPGNVMDMEALVSWLEVNGFLRTGTVRDTGEYAVRGGIV
DLYAPGMPEPLRLDFFGDTLESIRAFDPETQRTTHQLRALDLVPMSELQLTTETMRRFRQ
GYVAAFGTATRDDTLYEAVSEGRRHPGVEHWLPLFHDHLDTLFTYLPGVPFVFDALADDA
AGERLAQIADYYDARKAALDQPVVGGAPYKPLPPDALYLGASEWAEQVGKEAIVRLTPFA
QPETSGRLVVDIGGRQGRSFAAERADETANVFDVAVRHVRELQKAGKHVVLAAWSEGSRE
RLGHVLADHGLTQAKPISRLAHVSALARNEAALVVWGLEHGFETDDLAIVGEQDILGDRL
VRAKRKAKRAQDFIAEVSSLTAGDLVVHVNHGIGRFVGLKTIDAAGAPHDCLELHYAGGD
KLFLPVENIELLSRYGSEDTEAVLDKLGGVAWQARKAKLKQRIREMAGALIKIAAARALK
EAPRIQPPEGLYDEFSARFPYDETEDQQNAIDAVLDDLAAGRPMDRLICGDVGFGKTEVA
LRAAFAVALSGRQVAVVVPTTLLARQHYKAFAERFQGLPVRIAQASRFVAAGEMKKVKEG
LTDGTVDIVVGTHALLGKAIRFKDLGLIIVDEEQHFGVAHKERLKELRAEVHVLTLSATP
IPRTLQLALTGVRELSLIATPPVDRLAVRTFITPFDPLVVREALLRERYRGGQAFYVCPR
IEDLAEVKAFLDAEVPEARVVVAHGQMPAGQLEDAMTAFYEGKFDILLSTTIVESGLDIP
RANTLIVHRADMFGLAQLYQLRGRVGRSKTRAYALFTVPANRTLTVTAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGYELYQQMLEEAVAQLKAGVTDEEAEEQ
WSPSITIGTPVMIPEGYVPDLQLRLGLYKRLSTLERDDEIDAFGAELIDRFGPLPEEVDQ
LLKLVAIKALCRRANVEKVEAGPKGLIVAFRDNSFANPEGLIAYVAGEGTLAKVRPDMRI
VFIQDMDSAEARLKGTARVLRDLVRIAEQRKAA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaacgcgccatcgaggccctgaagcgggccgaaagcctcaccgtcgcgagc
gtgcccgacgggctcgacgccatcgtcgcggccgatctcgcacgcgccctcgccaaaggc
gaggagagggcggcgacgctcgtgcacgtggcccgcgacggccagcgcatggcggcgatg
gagacggcgctgtcgttcgttgcgccggagatcgatgtcctttcctttcccgcctgggac
tgccagccctacgaccgggtgtcgcccaacgccgccgtgaccgcgcggcgcatgacgacg
ctcgcccggctcgcccgcacgcgggcgggagaggacaagccgcgcatcctgctcacgacg
gtcaacgccatcctgcagcgcgtgccgcccatcgcccgcatcgccaccgagacgctctcg
gccgcgcccggcaatgtcatggacatggaggcgctcgtcagctggctcgaggtcaacggc
ttcctgcgcaccggcaccgtgcgtgacacgggcgaatatgcggtgcgcggcggcatcgtc
gacctctatgcccctggtatgccggagccgctgcgtctcgacttcttcggcgacacgctc
gaatcgatccgggccttcgatcccgagacgcagcgcaccacgcaccagctgcgcgcgctc
gacctcgtgccgatgagcgaactgcagctcaccaccgagaccatgcgccgcttccgccag
ggctatgtggcggccttcggcacggcgacgcgggacgacacgctctacgaggcggtgagc
gaggggcggcgccatcccggcgtcgagcactggctgccgttgttccacgaccacctcgac
acgctgttcacctatctgccgggcgtgcccttcgtcttcgacgcgctcgccgatgacgcg
gcgggcgagcgtctcgcgcagatcgccgattattacgatgcccgcaaggccgccctcgac
cagccggtcgtcggcggagcgccctataagccgctgccgccggacgcgctctatcttggt
gcgagcgaatgggccgaacaggttggaaaagaagcgattgtccgcctgacgccctttgcc
cagccggagacgagcggacggctcgtggtcgatatcggtggccggcaggggcgcagcttc
gccgccgagcgggcggacgagacggcgaacgtcttcgacgtcgccgtgcgccacgtgcgc
gagttgcagaaggcgggcaagcatgtggtgctcgctgcctggtcggagggttcgcgcgag
cgtctcggccatgtgcttgccgaccatggcctgacgcaggcgaagccgatttcgcgtctc
gcccatgtctcggcgctcgcccgcaacgaggcggcgctcgtcgtctgggggctggagcac
ggcttcgagaccgatgacctcgccatcgtcggcgagcaggacatcctcggcgaccgtctc
gtgcgcgccaagcgcaaggccaagcgcgcgcaggatttcatcgccgaagtctccagcctc
accgccggcgatctcgtggtgcacgtcaaccacggtatcggccgattcgtcgggctgaag
accatcgacgcggccggagcgccgcacgactgcctcgagctgcactatgccggcggcgac
aagctgttcctgccggtggagaacatcgagctcctgtcgcgctacggctcggaggacacg
gaggcggtgctcgacaagctcggcggcgtcgcctggcaggcgcgcaaggccaagctcaag
cagcgcatccgcgagatggccggggcgctgatcaagatcgcggcggcgcgggccctcaag
gaggcgccgcgcatccagccgccggaaggactctacgacgaattctcggcgcgctttccc
tacgacgagacggaggaccagcagaacgccatcgacgcggtgctcgacgatctcgccgcc
gggcggccgatggaccggctcatctgcggcgatgtcggtttcggcaagaccgaggtggcg
ctgcgcgcggccttcgcggttgccctgtcgggccgccaagtggcggtcgtcgtgccgacg
acgctgctggcgcgccagcactacaaggccttcgccgaacgcttccaggggctgccggtc
cgtatcgcccaggcgtcgcgcttcgtcgccgccggcgagatgaagaaggtcaaggagggg
ctcaccgacggcaccgtcgacatcgtcgtcggcacccatgccctgctcggcaaggccatc
cgcttcaaggacctcggcctcatcatcgtcgacgaggagcagcacttcggcgtcgctcac
aaggagcggctgaaggagctgcgcgccgaggtgcacgtgctgaccctgtcggcgacgccc
attccgcgcacgctgcaactcgcactcaccggggtgcgcgaactgtcgctcatcgcgacg
ccgccggtcgaccgcctcgccgtgcgcaccttcatcacgcccttcgatccgctcgtcgtg
cgcgaggcgctgctacgcgagcgctaccgcggcggccaggccttctacgtctgcccgcgc
atcgaggacctcgccgaggtcaaggccttcctcgacgccgaggtgccggaggcgcgcgtc
gtcgtcgcccacgggcagatgccggccggccagctcgaagacgccatgacggccttctac
gagggcaagttcgacatcctcctgtcgacgaccatcgtcgaatcgggcctcgacatcccc
cgcgccaacacgctcatcgtgcaccgggcggacatgttcggccttgcccagctctatcag
ctgcgcgggcgcgtcggccgctcgaagacgcgcgcctatgcgctcttcaccgtgccggcc
aaccgcacgctcaccgtgacggccgagcgccggctcaaggtgctgcagtcgctcgacacg
ctcggggccggcttccagctcgccagccacgacctcgacatccgcggcgccggcaacctc
ctcggcgaggagcagtccggccacatcaaggaggtcggctacgagctctaccagcagatg
ctggaggaggcggtggcccagctcaaggccggcgtcacggacgaggaggccgaagagcag
tggtcgccgtcgatcaccatcggcacgccggtgatgatcccggagggctacgtgcccgac
ctgcagctgcgcctcggcctctacaagcgcctgtcgacgctggagcgcgacgacgagatc
gacgccttcggcgccgagctcatcgaccgcttcggcccgctgccggaagaggtcgaccag
ctcctcaagctcgtcgccatcaaggccctgtgccggcgcgccaatgtcgagaaggtcgag
gccgggccgaagggtctcatcgtcgccttccgcgacaattccttcgccaatccggaaggc
ctcatcgcctatgtcgccggcgagggcacgctcgccaaggtgcggccggacatgcgcatc
gtcttcatccaggacatggacagcgccgaggcgcgcctgaagggcacggcccgcgtgctg
cgcgacctcgtgcgcatcgccgaacagcgcaaggcggcgtga
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