Chelatococcus sp. CO-6: AL346_20130
Help
Entry
AL346_20130 CDS
T04040
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chel
Chelatococcus sp. CO-6
Pathway
chel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL346_20130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chel03019
]
AL346_20130
Enzymes [BR:
chel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL346_20130
Messenger RNA biogenesis [BR:
chel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL346_20130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALA19300
LinkDB
All DBs
Position
4307015..4308544
Genome browser
AA seq
509 aa
AA seq
DB search
MTSFSDLGLAQPLLKALESEGYEQPTPIQAQAIPHVISGRDLLGIAQTGTGKTAAFALPI
LHRLANAPKRPGRGRCRVLVLSPTRELASQIGESFRTYGRHLNLRTTVIFGGVGHRPQSD
ALARGLDVLVATPGRLIDHMQTGAVSFAETEVVVLDEADQMLDMGFIHAIRKIVPRLPKE
RQNLFFSATMPKEIAALASDLLHDPVQVSVTPVATTAERIDQRVIFVETARKRNLLAEIL
KGEKLGRTLVFTRTKHGADRVVRHLEQDGIRAAAIHGNKSQSQRERALGGFRTGETPILV
ATDIAARGIDVDGVTHVINFDLPNVPESYVHRIGRTARAGADGSAISFCDGEERAYLRAI
EKLTRQKIPATDRRANPGAEPEEPAEARPQGRNGGGRNGPGKSAAGKGRHSPRGGRNAPQ
PGHHSAGKAPGHGNGHGHGSGLGQGNGQRQQDGASRRDGQRPAAQGSGKPQQRDHHRGQG
QGHAPAGAERMDGIGFMRPARRRSDGPSR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcattttccgatctcggcctcgcccaaccgctgctcaaggcgctggagagcgag
ggttacgagcagccgacgccgatccaggcgcaggccattccccatgtcatctccggccgc
gacctgctcggcatcgcccagacgggcacgggcaagacggcggccttcgcccttcccatc
ctccaccgcctcgccaacgcgccgaagcgcccgggccgcgggcgctgccgcgtgctcgtg
ctgagcccgacgcgcgagctcgccagccagatcggcgagagcttccgcacctatggccgc
cacctcaacctgcgcaccaccgtgatcttcggcggcgtcggccaccggccgcagtccgat
gcgctggcgcgcggcctcgacgtgctggtcgccacccccggccggctgatcgaccacatg
cagacgggtgccgtcagctttgccgagacggaggtcgtcgtcctcgacgaggccgaccag
atgctcgacatgggcttcatccacgccatccggaagatcgtgccgcgcctgccgaaggag
cgccagaacctcttcttctcggcgaccatgcccaaggagatcgccgcgcttgcgtccgac
ctgctgcacgacccggtgcaggtgtcggtgacgccggtcgcgacgacggccgagcgcatc
gaccagcgcgtcatcttcgtcgagacggcgcgcaagcgtaaccttctcgccgagatcctg
aagggcgagaagctgggccgcacgctcgtcttcacccgcaccaagcatggcgccgaccgc
gtggtgcgccacctcgaacaggacggcatccgggccgcggcgatccacggcaacaagagc
cagtcgcagcgcgagcgcgcgctcggcggcttccgcaccggcgagacgccgatcctcgtg
gcgacggacatcgccgcccgcggcatcgatgtcgacggcgtgacccacgtcatcaacttc
gacctgccgaacgtgccggaatcctacgtgcaccgcatcggccgcacggcccgcgccggc
gccgacggcagcgccatctccttctgtgacggtgaggagcgcgcgtatcttcgggccatc
gagaagctgacgcgccagaagatcccggcgaccgaccggcgcgccaatccgggcgccgag
ccggaggagcccgccgaagcccgcccgcagggccgcaacggcggcggcaggaacggcccc
ggcaagagcgcagccggcaagggccggcattcgccgcgcggcggccgcaacgcgccgcag
ccgggccaccacagcgccggcaaggcgccgggtcacggcaacggccatggtcacggcagc
ggcctcggccagggcaacggccaacgccagcaggacggtgcgtcccgccgtgatggccag
cggccggccgcccagggcagcggcaagccgcagcagcgcgaccaccaccgtggtcagggc
cagggtcatgccccggccggcgccgagcgcatggacggcatcggtttcatgcgcccggcc
cgccgccgcagcgacggcccgtcgcgctga
DBGET
integrated database retrieval system
