Candidatus Cardinium hertigii: DK880_00239
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Entry
DK880_00239 CDS
T05479
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cher
Candidatus Cardinium hertigii
Pathway
cher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK880_00239 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cher03019
]
DK880_00239 (recQ)
03400 DNA repair and recombination proteins [BR:
cher03400
]
DK880_00239 (recQ)
Enzymes [BR:
cher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK880_00239 (recQ)
Messenger RNA biogenesis [BR:
cher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK880_00239 (recQ)
DNA repair and recombination proteins [BR:
cher03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DK880_00239 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF3052
Motif
Other DBs
NCBI-ProteinID:
AWN81571
UniProt:
A0A2Z3L7Z4
LinkDB
All DBs
Position
complement(301482..303374)
Genome browser
AA seq
630 aa
AA seq
DB search
MERIHILLQKHWGYTTFRPLQKEIIQGILDGRDLFVLLPTGSGKSLCFQLPALCHKGLTL
VVTPLIALMKDQVAQLTQRGIYAEAIFSGMSNAEIERRLDNCLYGPVKLLYVSPERLHTD
LFKLRAAALSIVTLVIDEAHCISQWGYDFRPSYLEIAHFKQTIPAANTVAFTATATKNVQ
LDIQKHLQLTDPLCFIQTFHRSNLIYWVTQTDHKLAKLLQALQHTTGPAIVYVHTRKKTQ
KVADFLYKNGITAAYYHAGLNMTERTSKQEAWAANKTRVMVATAAFGMGIDKADVSLVMH
MDLPTSLEAYCQETGRAGRNNRPAYAILLYDLQDIITLRQRWKESYPTADQIRKVYQHLV
NYYAIAVGSHAFITYDFDLEDFKKSIGLDTKLAYYGLKVLESEGFIQLNEAYYQPSKLYC
PLSRKELYAFQLLHLSYDLLIKGLLRLYGGNLFTPYCTISEKKIAQCIQFTERQVEKQLY
SLHQLKVIEYFPQKNQPQITFLTPRYPVLPLNIMRIEQKNKTAYKQIEAVVQYITNNCCC
RLSTLLDYFEEESIICHQCDVCKGNSKAKETAKGKDYIIELITQGKQDIKALLAAVPIEK
EKEYIALIRTMLDQRELCYQSPGRLQIVPK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggaacggatccatattttattacagaagcattgggggtatactacctttaggccactg
caaaaagagatcatccaaggtatcttggatgggagggatttgtttgtattattgcctaca
ggcagtgggaaatcactctgctttcagctaccagccttatgccataaaggtttaacgctt
gtggttacgccgcttattgcacttatgaaagatcaggtagcacagctaacgcaaagaggt
atttatgcagaggctattttttcaggcatgtctaacgcggaaatagagcgtaggttagat
aactgtctatatggccctgttaagctgctgtatgtttcaccggagcgattgcacacggat
ctctttaagttgcgtgcggctgctctgtccattgttacgttagtaatagatgaggcgcac
tgcatttcgcagtggggctatgattttaggccttcgtacctagagatcgcgcattttaag
caaaccattcctgcggctaatacggttgcctttacagctactgctactaaaaatgtacaa
ttagatatccagaagcatctccaacttacagatccgctctgctttatacagacttttcat
agatccaatttaatttattgggtgactcaaacagatcataagttagcaaaattacttcaa
gcactccagcatacgactggtcctgctatcgtatatgtccacacccgtaaaaaaacgcaa
aaggtagctgattttttatataaaaatggcattactgctgcctattaccatgctggtttg
aatatgacagagcgaacgagcaagcaggaagcatgggcagcaaataaaaccagagtaatg
gttgcaacagctgcttttggtatgggtattgataaggccgatgtctctcttgtaatgcat
atggatttacctacctcattagaagcttattgccaagaaacgggtagagcaggccgtaat
aataggcctgcatatgctattcttctgtatgatttacaagatattattactttaaggcaa
agatggaaagaaagttatccaacagctgaccagattagaaaagtgtaccagcatttggta
aattattatgcaatagcagtaggctctcatgcttttataacttatgattttgatttagaa
gactttaaaaaaagtataggcctagacacaaaattagcttactatggattaaaagtatta
gaatcagaaggatttattcagctaaacgaggcctattatcagccatccaagctgtattgt
ccgctgtccagaaaagaattatatgcttttcaacttttacatctttcctatgatttattg
attaaaggccttttgaggctttatggtggtaacttgtttactccttattgtacaatatct
gagaaaaaaatagctcaatgcatccagtttacagaacggcaagtggaaaagcagctatat
agcttacatcagctaaaggtcattgaatattttccacagaaaaaccagccacagattacc
tttttaacaccacgttatcctgtattgccgttgaacataatgcgcattgaacaaaaaaat
aaaacagcttataagcaaatagaagcagttgttcaatatattactaataactgttgttgc
cgattaagtacactattagattattttgaagaagaatccattatttgtcaccaatgtgat
gtttgtaaagggaatagcaaggcaaaagaaacagcaaaagggaaagactatattatagaa
cttattacgcaaggcaagcaagatattaaagcgctacttgcagctgttcccattgaaaag
gaaaaagaatacatagcattaatccgtactatgctggatcaaagggaattatgctaccaa
agtcctggtaggctacaaattgttcctaagtga
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