KEGG   Candidatus Cardinium hertigii: DK880_00239
Entry
DK880_00239       CDS       T05479                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cher  Candidatus Cardinium hertigii
Pathway
cher03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cher00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DK880_00239 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cher03019]
    DK880_00239 (recQ)
   03400 DNA repair and recombination proteins [BR:cher03400]
    DK880_00239 (recQ)
Enzymes [BR:cher01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DK880_00239 (recQ)
Messenger RNA biogenesis [BR:cher03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DK880_00239 (recQ)
DNA repair and recombination proteins [BR:cher03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DK880_00239 (recQ)
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII Cas3-like_C_2 DUF3052
Other DBs
NCBI-ProteinID: AWN81571
UniProt: A0A2Z3L7Z4
LinkDB
Position
complement(301482..303374)
AA seq 630 aa
MERIHILLQKHWGYTTFRPLQKEIIQGILDGRDLFVLLPTGSGKSLCFQLPALCHKGLTL
VVTPLIALMKDQVAQLTQRGIYAEAIFSGMSNAEIERRLDNCLYGPVKLLYVSPERLHTD
LFKLRAAALSIVTLVIDEAHCISQWGYDFRPSYLEIAHFKQTIPAANTVAFTATATKNVQ
LDIQKHLQLTDPLCFIQTFHRSNLIYWVTQTDHKLAKLLQALQHTTGPAIVYVHTRKKTQ
KVADFLYKNGITAAYYHAGLNMTERTSKQEAWAANKTRVMVATAAFGMGIDKADVSLVMH
MDLPTSLEAYCQETGRAGRNNRPAYAILLYDLQDIITLRQRWKESYPTADQIRKVYQHLV
NYYAIAVGSHAFITYDFDLEDFKKSIGLDTKLAYYGLKVLESEGFIQLNEAYYQPSKLYC
PLSRKELYAFQLLHLSYDLLIKGLLRLYGGNLFTPYCTISEKKIAQCIQFTERQVEKQLY
SLHQLKVIEYFPQKNQPQITFLTPRYPVLPLNIMRIEQKNKTAYKQIEAVVQYITNNCCC
RLSTLLDYFEEESIICHQCDVCKGNSKAKETAKGKDYIIELITQGKQDIKALLAAVPIEK
EKEYIALIRTMLDQRELCYQSPGRLQIVPK
NT seq 1893 nt   +upstreamnt  +downstreamnt
atggaacggatccatattttattacagaagcattgggggtatactacctttaggccactg
caaaaagagatcatccaaggtatcttggatgggagggatttgtttgtattattgcctaca
ggcagtgggaaatcactctgctttcagctaccagccttatgccataaaggtttaacgctt
gtggttacgccgcttattgcacttatgaaagatcaggtagcacagctaacgcaaagaggt
atttatgcagaggctattttttcaggcatgtctaacgcggaaatagagcgtaggttagat
aactgtctatatggccctgttaagctgctgtatgtttcaccggagcgattgcacacggat
ctctttaagttgcgtgcggctgctctgtccattgttacgttagtaatagatgaggcgcac
tgcatttcgcagtggggctatgattttaggccttcgtacctagagatcgcgcattttaag
caaaccattcctgcggctaatacggttgcctttacagctactgctactaaaaatgtacaa
ttagatatccagaagcatctccaacttacagatccgctctgctttatacagacttttcat
agatccaatttaatttattgggtgactcaaacagatcataagttagcaaaattacttcaa
gcactccagcatacgactggtcctgctatcgtatatgtccacacccgtaaaaaaacgcaa
aaggtagctgattttttatataaaaatggcattactgctgcctattaccatgctggtttg
aatatgacagagcgaacgagcaagcaggaagcatgggcagcaaataaaaccagagtaatg
gttgcaacagctgcttttggtatgggtattgataaggccgatgtctctcttgtaatgcat
atggatttacctacctcattagaagcttattgccaagaaacgggtagagcaggccgtaat
aataggcctgcatatgctattcttctgtatgatttacaagatattattactttaaggcaa
agatggaaagaaagttatccaacagctgaccagattagaaaagtgtaccagcatttggta
aattattatgcaatagcagtaggctctcatgcttttataacttatgattttgatttagaa
gactttaaaaaaagtataggcctagacacaaaattagcttactatggattaaaagtatta
gaatcagaaggatttattcagctaaacgaggcctattatcagccatccaagctgtattgt
ccgctgtccagaaaagaattatatgcttttcaacttttacatctttcctatgatttattg
attaaaggccttttgaggctttatggtggtaacttgtttactccttattgtacaatatct
gagaaaaaaatagctcaatgcatccagtttacagaacggcaagtggaaaagcagctatat
agcttacatcagctaaaggtcattgaatattttccacagaaaaaccagccacagattacc
tttttaacaccacgttatcctgtattgccgttgaacataatgcgcattgaacaaaaaaat
aaaacagcttataagcaaatagaagcagttgttcaatatattactaataactgttgttgc
cgattaagtacactattagattattttgaagaagaatccattatttgtcaccaatgtgat
gtttgtaaagggaatagcaaggcaaaagaaacagcaaaagggaaagactatattatagaa
cttattacgcaaggcaagcaagatattaaagcgctacttgcagctgttcccattgaaaag
gaaaaagaatacatagcattaatccgtactatgctggatcaaagggaattatgctaccaa
agtcctggtaggctacaaattgttcctaagtga

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