Candidatus Cardinium hertigii: DK880_00375
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Entry
DK880_00375 CDS
T05479
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cher
Candidatus Cardinium hertigii
Pathway
cher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK880_00375 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cher03019
]
DK880_00375 (pnp)
03016 Transfer RNA biogenesis [BR:
cher03016
]
DK880_00375 (pnp)
Enzymes [BR:
cher01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DK880_00375 (pnp)
Messenger RNA biogenesis [BR:
cher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DK880_00375 (pnp)
Transfer RNA biogenesis [BR:
cher03016
]
Prokaryotic type
tRNA degradation factors
DK880_00375 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
MOEP19
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AWN81703
UniProt:
A0A2Z3L7U3
LinkDB
All DBs
Position
complement(484191..486359)
Genome browser
AA seq
722 aa
AA seq
DB search
MFRKVISKTITLPDHPLITIETGKLATQADGAVVVRVADTMLLATVVAKEHPNSEQGGFP
LSIDYQEKFAASGKIPGGFFKREGRLGDHEIIIARLVDRALRPLFPKGFAHAVQVNIALI
SADDAVLPDAFAALAASAALAVSPIPFNGPISEVRVVRVKGKFVINPVASLVEQADINLI
VAATDDSILMVEGEMLEVAEAEVVEAIRYAHTAIKWQCQVQRELMEAVGVTKQPFTPIDW
LAAIDYPATLREAVYHAMYAVARKGIPSKILRREAFTAVLEAYKEQLAKDQQGEDIAAAQ
QQAWAFEIEKQVIRALVLEEGLRVDGRRHDQIRSIESEVDYLPAAHGSALFTRGETQSLT
TVTLGSKLDEQIIDRAMEDGYSRFLLHYNFPAFSTKEIRPNRGPSRREIGHGNLAMRALK
AVLPPDTENLYTIRIVSDILESNGSSSMATVCAGSLALMDAGIPIKSHVAGIAMGLITDP
MTNQFAILSDILGDEDYVGDMDFKVTGTQEGITACQMDMKLAGISYQMLEQALLQAKAGR
LHIFQKMTETIAVARSARKPHAPSVTTIEVDRELIGIIIGPGGKVIQEIQKESDTSITIV
EKDKKGIVTIFASNQVLLEKAMSRIQTIVAKPVVGEVYTGKVKAVLNYGAFVEFMPGKDG
LLHVSEVRWERIEDLEKVLEVGETLQVKLVGIDSKSGKYRLSRKVLLVPEGQGGIDQDPL
ID
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaaaagttatttcaaagaccataaccctaccagaccaccctctgattaccata
gagactggtaagcttgctacgcaagcagatggtgctgtagtcgtacgtgtagccgatacc
atgcttttagcaacagtagtagctaaggagcacccgaattcggaacaaggaggatttcct
ctttctattgattatcaggagaaatttgctgcttctggtaagatacccggtggttttttt
aagcgagagggtagattaggggatcatgaaattattattgcaaggctagtagaccgtgct
ttacgtccgcttttccctaagggatttgcgcatgctgttcaggttaatatagcattgata
tctgctgatgatgctgtgttaccagatgcatttgctgcattagctgcctctgctgcgtta
gcggtttcacctattccatttaacggacctatttctgaagtacgggtcgtgcgcgtaaaa
ggtaagtttgtcattaatccagtggctagtttagtagagcaagcggatatcaaccttatc
gtagcggctacggatgatagcatccttatggtagaaggggaaatgttagaggtagcagaa
gcagaagtagtggaagccatacgttatgcccacacagctattaaatggcagtgtcaagta
caaagggagcttatggaagcagttggtgtgaccaagcagccctttacacctattgattgg
cttgccgctatagattatccggctactttacgagaggcggtttaccatgccatgtatgcc
gttgcacggaaaggcataccctctaagattttgcgtagggaagcttttacagctgtgctg
gaagcatataaggaacagttggctaaggaccaacaaggtgaagacatagcagctgctcag
cagcaagcatgggcctttgaaatagaaaaacaagttattcgggcgcttgtattagaggaa
gggcttcgtgtagatggccgtcggcatgatcaaattcggtcgattgaatcagaagtagat
tatctacctgctgcacatggttctgctctttttacaagaggagaaacgcaatccttgact
acggttaccttgggcagtaagcttgatgagcagattattgatagagccatggaggatgga
tacagtcgttttctattgcattataattttcctgctttttctactaaagaaattaggccc
aatagaggtccttctcgtcgggagatagggcatggtaatttagctatgcgggcattgaag
gcggtactaccacctgatacagaaaatttgtatactatacgtatagtgtctgatatatta
gagtccaatggctcttcttctatggcaacggtttgtgcaggttctttggctttgatggat
gcggggattcctattaagtcacatgtagcaggtattgctatgggacttattacagatcct
atgaccaatcagttcgctatactatctgatatcttgggggatgaggattatgtaggagat
atggattttaaggtgacaggtacgcaagaaggtattacagcctgtcaaatggatatgaag
ctagctgggatatcctatcaaatgctggagcaagctttgttacaggctaaggcaggtagg
ctccatatttttcagaaaatgactgaaacgatagcggttgcccggtcagcacgtaagcca
catgcccctagtgttactactatagaggtagacagagaactgattggaataattattggg
cctggaggaaaagtaattcaagaaattcaaaaagagagtgataccagtattaccattgta
gagaaagataaaaaaggtattgttactatatttgcatctaaccaggtattattagaaaaa
gcaatgagcagaatacaaactattgtagccaaaccagttgttggggaagtttatacaggg
aaggtgaaggctgtattaaactatggtgcatttgtggaatttatgcctggtaaggatggt
ttgttacatgtttcagaagtgcgttgggaacgcatcgaagatttagagaaggtattagaa
gtgggcgaaaccttacaagtaaagttagttggtatagattctaaatcaggtaaatataga
ttatcacgtaaggtattgttggtaccagaagggcagggagggatagatcaggatcctctg
attgattag
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