Chitinophaga pendula: KTO58_06515
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Entry
KTO58_06515 CDS
T08407
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chf
Chitinophaga pendula
Pathway
chf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTO58_06515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chf03019
]
KTO58_06515
03009 Ribosome biogenesis [BR:
chf03009
]
KTO58_06515
Enzymes [BR:
chf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KTO58_06515
Messenger RNA biogenesis [BR:
chf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KTO58_06515
Ribosome biogenesis [BR:
chf03009
]
Prokaryotic type
rRNA helicases
KTO58_06515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UCJ08836
LinkDB
All DBs
Position
1657707..1659446
Genome browser
AA seq
579 aa
AA seq
DB search
MTTFESLGLQEPILKAIQDLGFTAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLP
LLQQLDVKNRKPQGLILCPTRELCLQIASDLGNFSKYLGDVSVVAVYGGASIIQQLRELK
RGAHIVVATPGRLLDIIERGAINFENVRYAVLDEADEMLNMGFQEDINSILSNTPESKTT
WLFSATMPQEVRRIAQNYMSDPFELTVGNKNSGNANIEHEYYVVRPREKYAALKRIVDYN
PEIFGIVFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSIQVLVATD
VAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGKIRQIERV
IGKKFIKSEVPDGFAVCEKQLFGLVHKVHNVTVNEEQIEPYLERIYEEFAEMSKEELIKR
FASLEFNQFLEYYQDAPDLNVKEERRSSSFEGGDRRGNSKFTRLFINLGSVDDFTRGDML
RYLCDNTGVRGNKIGRIDLKGVYSFFEVENDVVDSVVQSFKKVEYNGRNVRIEMSQDGDK
RRSGGPRPPRGEDGGRKRPWEGGAGGGSRKPTFKRKFSN
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgactacatttgaatcactgggcttacaggagcctattttaaaagcaatccaggatctc
gggttcaccgcgccaacgcccatccaggaaaaagcaatacctgtattattgggaggcgac
cgggattttgttggattagctcagacgggcaccggtaagaccgccgcttttggcctgcct
ttgttgcagcagctggatgtcaaaaacagaaaaccccagggactcatattatgtcctact
cgtgaactttgcttgcagatcgccagcgatctgggcaacttcagcaaatacctgggcgat
gtcagcgtggtagccgtatacggtggcgccagcatcatccagcaattacgcgagctgaaa
agaggcgcacacatcgtcgtggccacccccggccgcttgctcgatatcatcgaaagaggt
gccatcaacttcgaaaacgtacgctacgccgtactcgatgaagcagacgaaatgctcaat
atgggcttccaggaagacatcaacagcatcctctccaacacacccgaatccaaaacaacc
tggctcttctcggctaccatgccacaggaagtacgccgcatcgctcaaaactatatgtca
gatcctttcgaactgactgtaggtaacaaaaacagcggtaacgccaacatagaacacgaa
tactacgtagtacgcccgcgtgaaaaatacgccgcactcaaacgtatcgttgactacaac
ccggagatcttcggtatcgtatttacccgtaccaaaatagaaagccaggaaatcgcagaa
tccctcatccgtgacggatacaatgccgatgcactccatggtgaccttacccagcaacag
cgcgataaggtaatgaaacgcttccgcgaaaaatctatccaggtattggtagctaccgac
gtagccgcccgtggtatcgacgtagacaacgtaacacacgtaatcaactacgaactgccg
gatgacgtagagaactatacccaccgtagcggccgtaccgcccgcgccggtaaatcaggg
atctctatcgccatcatcaccggccgtgataccggtaaaatccgccagatcgaacgcgta
ataggtaaaaaattcatcaaatccgaagtacccgatggcttcgccgtttgtgaaaaacaa
ctctttggcctcgtgcataaagtacataacgtaaccgtaaacgaggaacaaatcgaacca
tacctggagcgtatatacgaagagtttgcagaaatgagcaaagaagaactgatcaaacgt
ttcgcttccctcgaattcaaccagttcctggaatactaccaggatgcacctgacctgaat
gtgaaggaagaacgtcgtagcagcagcttcgaaggcggcgatcgcagaggcaacagcaaa
ttcacccgcctgttcatcaacctcggctccgtagacgacttcacccgcggcgacatgctg
cgctacctctgtgataacacaggcgtacgcggcaataagatcggccgtatcgacctcaaa
ggcgtatactccttcttcgaagtggaaaacgatgtagtggatagcgtagtacaaagcttc
aaaaaagtagaatacaacggccgcaatgtaaggatcgaaatgtcccaggatggcgacaaa
cgtcgcagcggtggcccacgtcctccccgcggagaagatggtggccgcaaacgcccatgg
gaaggtggcgccggcggaggtagcagaaaaccaaccttcaaacgcaagttcagtaactaa
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