Chitinophaga pendula: KTO58_08365
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Entry
KTO58_08365 CDS
T08407
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chf
Chitinophaga pendula
Pathway
chf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTO58_08365 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chf03019
]
KTO58_08365 (rnr)
03016 Transfer RNA biogenesis [BR:
chf03016
]
KTO58_08365 (rnr)
Enzymes [BR:
chf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KTO58_08365 (rnr)
Messenger RNA biogenesis [BR:
chf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KTO58_08365 (rnr)
Transfer RNA biogenesis [BR:
chf03016
]
Prokaryotic type
tRNA degradation factors
KTO58_08365 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
OB_RNR_1st
OB_Dis3
TonB_C
Rrp44_CSD1
Motif
Other DBs
NCBI-ProteinID:
UCJ09183
LinkDB
All DBs
Position
2240067..2242691
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AA seq
874 aa
AA seq
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MNKKKKNKNKKGGNQKKTYRGAVEVTRSGMAFVTVEGLTRDIMVKQKNLNTALDGDEVLV
DVIRQAKNMGRMEGVITDILKRKKSEFTGTLQISKNFGFLLPEKGAFLPDIYIPANELKD
ARTGDKAVVRIVAWGEKSRKPVGEILEILDASNTNDLAMKEILIESGFPLSFPDEVIAEL
AHIGDQIPAAEIKKRKDCRKILTFTIDPVDAKDFDDALSIRRLKNGLYEIGVHIADVSHY
VLPDTALDKEAAKRATSVYLPDRVLPMLPEKISNELCSLRPHEDKLTFSAIFQMTVTGEI
KQYWLGRTVIHSAHRFTYEEVQDVIETGEGPYQQEVLLLNDIAQRLRKERFNEGAINFSS
QEVRFQLDPNGKPIGITIKESKEAHQLIEEFMLLANRTVAEYVFKLKVNKQPVPFPYRVH
DTPDEEKLKVFSVFARKFGYKFQMDNPDTIATSFNTMLQLVQGKPEQHVLETLGIRTMAK
AIYTTDDIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLAQCLDNEIRPDKHMERHCKHCSE
MERKAMEAERAGNKYKQVEYMQEFIGDAFEGVISGVAHFGFWVETVDTKCEGLVSLHNLN
ARDEFRHDESEYALIGMHTGRKFRIGDKVRIRVLSANLVKRQLDYDLADEQPNNNREQRK
DQGRKDPARKEKGRFQQPAEKRRQPQQPATVPVSADKPVSLPKPAASQDTASITKPPVTT
PAGVTNTPATAPEKSKKQKKTKTNPPVEIPTLPVAGPVSVDLPASAPTPKAVKTKAQPAA
KKKAAAKPTAKTTKPAKAKPAAQAPPAAPPKKAAAPPKEKAPAPKPATQKAAATPPKAAK
AAAKKTANLAKTSAKKTTTPKKAAASKTGKKNKN
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaaaaaaaagaataagaataagaaagggggtaaccagaaaaaaacctaccgc
ggcgccgtcgaagtaacacgctccggcatggctttcgttaccgtagaagggctgacacgc
gatatcatggtcaaacaaaagaacctcaataccgcgctcgatggagatgaagtgctcgta
gacgtcatccgccaggctaaaaatatgggccgcatggaaggggtcataacggatattctt
aaacgaaagaaatcagaatttaccggcaccttacagataagtaagaacttcggcttcctc
ttacccgaaaaaggcgcattcctgcccgatatctatataccggccaacgaattgaaagat
gccagaaccggcgataaagccgtcgttcgcatcgtcgcctggggagaaaaatcccgtaaa
ccagtaggggaaatactcgaaatactcgacgccagcaacaccaacgacctcgccatgaaa
gaaatactcatcgaaagcggcttcccgcttagcttccccgatgaggtcatagcagaactg
gcacatattggggaccagataccagctgcagaaataaagaaacgcaaagactgccgtaaa
atactcaccttcaccatcgaccctgtcgatgccaaagatttcgatgacgccctctccata
cgccgcctcaaaaacggcctctatgagatcggcgtacatatcgcagacgtaagccattac
gtcctgccggataccgccctcgacaaagaagcagccaaacgcgctacctccgtctatctg
ccggatcgcgtactgcccatgctccctgagaaaatatccaatgaactgtgttcgctccgc
ccgcatgaagataaactcaccttctccgccatattccagatgacagtcaccggagagatc
aaacaatactggctcggccgtaccgtcatccactccgcacaccggttcacttacgaagaa
gtacaggacgtaatcgaaacaggagaggggccctaccaacaggaagtattactgctcaat
gatatcgctcaacggctgcgtaaagaacgttttaatgaaggggccatcaacttctcctcg
caggaagtacgattccagctcgatcccaatggtaaacccatcggcatcaccatcaaagaa
agtaaagaagcgcaccagctgattgaagaattcatgctcctggccaacaggaccgttgca
gaatatgtattcaaactcaaagtcaacaaacaaccggtacctttcccgtaccgggtacac
gataccccggacgaagagaaactgaaagtattctccgtattcgcccgcaaattcggatat
aaattccagatggataacccggataccatcgcaacttcctttaacaccatgttgcaactc
gtacagggcaaaccggaacaacatgttctcgaaaccctcggcatccgtaccatggccaaa
gcgatctataccaccgatgatatcggtcactatggactgggctttgaacactactgtcat
ttcacctcccccatacgccgttaccccgatgtactcgtacaccgcgtactggcacaatgc
ctcgacaacgagatccgtccggataaacacatggaacggcattgtaaacattgctctgaa
atggaacgcaaagccatggaagcagaaagggcagggaataaatacaaacaggtcgaatac
atgcaggaattcatcggagatgccttcgagggtgtcatcagcggcgtagcccactttggg
ttctgggtagaaaccgttgataccaaatgcgagggcctggtaagcctgcataacctcaac
gccagggacgaattccgccatgatgaatcagaatacgccctcattgggatgcacaccggc
cgcaaattccgcataggcgataaagtaaggatccgcgtgttatcagctaacctcgtcaaa
cgccagcttgactacgacctggccgacgaacaacctaataacaatcgcgaacagcgcaaa
gatcagggccgcaaagaccctgcccggaaagaaaaaggccgcttccagcagccggccgaa
aaacgccggcagccacagcagcccgcaaccgtacccgtaagtgctgataagccggtatcc
ctgccgaaaccggctgcctcccaggataccgcgtctatcacaaagccgcctgtaaccaca
ccagccggagtaaccaatacaccagccaccgcaccggaaaaatcaaaaaaacaaaagaaa
acaaaaactaaccctccggtagaaataccaacactaccggttgcaggcccagttagcgtt
gacctgccggcgtcagcaccaactcccaaagcggtaaaaacaaaggctcaacctgcagcc
aaaaagaaagctgcagccaaaccgaccgctaaaacgacaaaaccggctaaagcaaaacca
gcagcccaggcaccaccggcggccccgccaaagaaagccgccgcccctccaaaagagaag
gctccggcccccaagcccgctacgcaaaaggctgccgccaccccgcctaaagctgctaaa
gccgccgccaaaaaaacggccaacctggctaaaacatccgctaaaaaaacaacaacacct
aaaaaggccgccgccagcaaaacaggaaagaaaaataaaaactaa
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