Chitinophaga pendula: KTO58_10530
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Entry
KTO58_10530 CDS
T08407
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
chf
Chitinophaga pendula
Pathway
chf03030
DNA replication
chf03430
Mismatch repair
chf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTO58_10530
03430 Mismatch repair
KTO58_10530
03440 Homologous recombination
KTO58_10530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chf03032
]
KTO58_10530
03400 DNA repair and recombination proteins [BR:
chf03400
]
KTO58_10530
Enzymes [BR:
chf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KTO58_10530
DNA replication proteins [BR:
chf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KTO58_10530
DNA repair and recombination proteins [BR:
chf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KTO58_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
GIY_YIG_2
DEDDh_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UCJ10246
LinkDB
All DBs
Position
complement(3003190..3004557)
Genome browser
AA seq
455 aa
AA seq
DB search
MYAIVDIETTGGHASANGITEIAVFIHNGKEVIEQYDTLVNPGMPIPYYIQSLTGITDEM
VATAPAFSEIAPRLANLLQDKIFVAHNVNFDYSFVKYQLNTEGFELRSKKLCTVRLGRKI
FPGLPSYSLGNLCRQLQIPIQDRHRATGDAAATVKLFERMLADDHQHAIASALKAGSKEQ
FLPPNLPPDQVKQLPMTPGVYYFHDQKGKVVYVGKAKDIKKRVNSHFTGNKPNRQRQEFL
RNIYSISCQETGTELIAHILESVEIKRLWPPYNAAQKHVELRYGFYTFEDQAGYLRLAIE
KKRKYTTALYDFNLLVNGQQVLRKLIRQFDLCPKLCFLQKGHGPCTVLTGHICHGACEKR
ESVTEYNLRMQTAINFLHQQLPSFIITGAGRHPAEQSYILVEKGRFYGMGYLSRDETITD
PAALKEHLTPYPENEYISHLLRVQADGLPKGVIRF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcgatcgtcgatatagaaaccacaggaggccacgccagcgcaaacggcatcacc
gaaatagccgtcttcatccataacggaaaagaagtgatcgaacaatacgataccctcgtc
aaccccggcatgcccatcccttattacatccagtccctcaccggcatcacagacgaaatg
gtggcaacagcacccgccttctccgaaatagcaccccgcctcgccaacctcctgcaagac
aaaatattcgtcgcccataacgtcaacttcgactactccttcgtcaaataccaactcaat
accgaaggtttcgaactacgcagcaaaaaactatgcaccgtccgcctcggccgcaaaata
ttccccggcctgccgtcctatagcctcggcaacctctgccggcaactgcagatccccatc
caggaccggcaccgcgccaccggcgacgccgccgccaccgtcaaactgttcgaacgcatg
ctcgccgatgaccatcagcatgccatcgcctccgccctcaaagcgggctccaaagaacaa
ttcctgccgcccaacctgccccccgaccaggtcaaacaactccccatgacaccaggggtc
tattacttccacgaccaaaaaggaaaagtagtctacgtaggcaaagccaaagacatcaaa
aaaagggtcaacagccactttaccggcaacaaacccaatcggcaacgacaggaattcctg
cgcaatatatacagcatatcctgccaggaaacaggcaccgaactgatcgcccatatcctc
gaatccgtcgagatcaaacgcctctggcctccctacaacgccgcccagaaacatgtagaa
ctccggtatggcttctacaccttcgaagaccaggccggatacctccgcctcgccatcgaa
aaaaaacgcaaatacaccaccgccctctacgactttaacctcctcgtcaatggacaacag
gtactgcgcaaactcatccgccagttcgacctctgccccaaactatgcttccttcagaaa
ggacatggcccctgcaccgtcctcaccggccatatctgccacggcgcctgcgaaaaaaga
gaaagcgtcaccgaatacaaccttcgcatgcaaaccgccatcaatttcctgcaccagcaa
ttgccgtccttcatcatcaccggcgcaggccggcaccccgcagaacaaagctatatcctc
gtggaaaaaggccgcttctatggcatgggatacctctcccgcgatgaaaccatcaccgac
cccgccgccctcaaagaacacctcaccccatacccggaaaatgaatatatctctcatctc
ctccgggtacaggcagatggcctccccaaaggagtcatccggttctaa
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