Chitinophaga pendula: KTO58_12385
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Entry
KTO58_12385 CDS
T08407
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
chf
Chitinophaga pendula
Pathway
chf03030
DNA replication
chf03430
Mismatch repair
chf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTO58_12385 (dnaE)
03430 Mismatch repair
KTO58_12385 (dnaE)
03440 Homologous recombination
KTO58_12385 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chf03032
]
KTO58_12385 (dnaE)
03400 DNA repair and recombination proteins [BR:
chf03400
]
KTO58_12385 (dnaE)
Enzymes [BR:
chf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KTO58_12385 (dnaE)
DNA replication proteins [BR:
chf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KTO58_12385 (dnaE)
DNA repair and recombination proteins [BR:
chf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KTO58_12385 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UCJ10253
LinkDB
All DBs
Position
3534886..3538524
Genome browser
AA seq
1212 aa
AA seq
DB search
MKFSHLHVHTQYSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGVFQFVAEAYNYKLN
PEDPKDKRLKVKPIVGCEFYLVENRFKRAFTREEKDIRYHQVLLAKDDEGYRNLIKLCSL
GYIEGLYGKYPRIDKELILQYNKGLIATTCCLGASVPKTILRHGEEAGEKEFKWWLDIFG
EDFYVEMQRHGIPEQEKVNEVLLRFAAKYNVKIIASNDSHYVDQADANAHDILLCINTGE
KKATPTMKEFADDDVSVKNRRFAFYNDQFYFKTTEEMSQLFHDLPQAIDNTNEIVDKIQL
LDLKRDILLPNFPIPKEFITQDQYLRHLTMEGARLRYTEMTPEIEERLNFELQTIENMGF
AGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPERK
SMPDIDTDFDDEGRQKVIDYVVQKYGRNQVAQIITYGTMAAKMSIKDVARVMDLPLQDSN
ALAKLVPEKPGIQLDRIFNAPLDGEKSLSEKEGLMGEDLENVKRLRELIKGQDLQGEVLR
EACVLEGSVRNTGIHAAGIIIAPKDLYDLIPVSTAKDSDLLVTQFEGSIIENAGVIKMDF
LGLKTLTIIKGALQMIKQNHDREIDIDEIPLDDEKTYELYQKGETNGTFQFESPGMQKYL
RELKPDRFDDLIAMNALYRPGPLEYIPLFIRRKHGLEPVQYDLAEMEEYLNDTYGITVYQ
EQVMLLSQKLANFSKGDADVLRKAMGKKQKAVLDKMKKQFMDGCAVNGHDLKVCDKVWTD
WEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLNNASNIEKITFFMEEAKRMG
IDVLPPDVNESFKGFAVNKQGQIRFGLAGLKGVGEAAIENLLEERQKDGLYKNIFDFIKR
VNQRAVNKKSLEALVMSGAFDCFPELHRAQYFHKPDNDNTNGLDKIVKFGQQVSAGSPTA
GGLFGFDELPEVEPPKIPPCDLWPLIQKLNNEREVTGIYISGHPLDDYRFEQRFYNMNSV
QELVEYQAEISTPGSTGGKSRERNFRLAVYVSGAQERISRNNRQFGIMSIEDYSGKFEFA
LWSEDFIRFGPYLKAGLCLYVNGGFKSKRFNDNEYEFKVNSIQLLQEVKKTHTKQVYLAT
RPKFITREFVDFLCDNFSRHPGNSQLSVQLKDLDDNLTVKLHTFNKHIEMNDELAHYLTK
EPNIEVYIETKQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcccacctgcacgtacatacgcaatattcgctgctcgacggggctgcggat
atcaaatcgctatataaaaaggccatggcatccaaccagcctgcgctggctattacggac
catggtaatatgtttggtgtatttcagtttgtagcggaagcctataattataagctcaat
cctgaagatccgaaggataaacgcctaaaagttaaacctattgtaggttgcgaattttat
ctggtggagaaccgttttaagcgggcgttcacgcgggaggaaaaggatatccggtatcac
caggtgttattagcaaaggatgatgagggctatcggaacctgatcaagttgtgttcactg
ggatatattgaggggctgtatggtaaatacccccgtattgataaggaattgatcctgcag
tataataagggtttgattgctactacctgctgtctgggggcatctgttcctaaaacgatc
ctgcgtcatggcgaagaagccggagagaaagagttcaagtggtggctggatatctttgga
gaggatttctatgtggaaatgcaacgccacggtatccctgaacaggagaaagtgaatgag
gtgttgttgcgttttgctgccaaatacaatgttaagattattgccagcaacgactctcac
tacgttgatcaggcagatgccaatgcccatgacatcctgctatgtattaacaccggcgaa
aagaaagccacgccgacgatgaaagaattcgcagatgatgatgtatccgtgaagaatcgt
cgttttgccttttataacgaccaattctattttaagacgacggaagagatgagccagctc
ttccatgaccttcctcaggcaatcgataataccaatgagatcgttgataagatccagtta
ttggatctcaagcgtgacatattgctacctaacttcccgatacccaaggagttcatcacg
caggatcaatatctgcgccacctgacgatggagggggcgcgtttacgatatacagaaatg
accccggagatagaagagcgtctcaatttcgagttgcagactatcgagaacatgggattc
gccggttacttcctgatcgtatctgactttattaaggcagggcgggacctgggagtgttc
attggtccgggtcgtggttcagcagccggttctgcggtagcatactgtattggtatcact
aatatagaccccatcaaatacaatttgctgtttgagcgtttccttaacccggagcgtaag
agcatgcccgatattgatacggactttgatgatgaaggccgtcagaaagtgattgactac
gtagtgcagaaatacggccgtaaccaggttgcgcagatcatcacctatggtacaatggct
gcgaagatgagtatcaaagacgtcgcgcgggtaatggacctgccactgcaggacagtaat
gcgctggcgaaactggtaccggaaaaacccggcatccagctggaccgtatcttcaatgcc
ccgctggatggtgagaaaagtctttctgagaaagaaggactgatgggagaagacctggaa
aatgttaagcgcttaagagagctgatcaaaggacaggacctgcagggtgaagtattacgg
gaggcttgcgtactggaaggctctgttcgtaatacaggtattcacgctgcgggtatcatc
attgctcctaaagacctgtatgatctgattccggtgtctacagccaaggattctgacttg
ttagtaacgcagtttgagggtagtatcatcgaaaatgccggtgtaatcaagatggacttt
ttgggtctgaagacccttaccatcattaaaggtgcactgcagatgatcaagcagaaccat
gaccgtgaaatcgatattgacgagataccgctggacgatgaaaagacctatgaactctat
cagaagggagaaaccaacggtacattccagtttgagtcgcccggtatgcagaaatacctc
cgggagctgaagcccgaccgttttgacgatcttatcgccatgaacgccttgtaccgtccg
gggccactggagtatattcctttgtttatccgtcgtaagcatgggctggagcctgtacaa
tatgacctggcagaaatggaggaatacctgaatgatacctatggtatcacagtataccag
gagcaggtgatgttgctgagccagaagctggcgaacttctccaaaggtgatgcggacgta
ttgcgtaaagcaatggggaaaaagcagaaggccgtactggataagatgaagaagcagttc
atggacgggtgtgcggtgaacgggcatgacctgaaggtatgcgacaaagtatggacggac
tgggaggcatttgcatcctacgcgttcaacaagtcgcactctacctgttatgcatttgtg
gcataccaaacggcttatcttaaagcccactaccctgctgaatatatggcagcggtattg
aacaacgccagtaatattgagaagatcaccttctttatggaggaagccaaacgtatgggt
atagacgtgcttcctcccgatgtaaatgaatctttcaaaggttttgcggtgaataagcag
gggcaaatccgttttgggttagcgggtcttaagggtgtgggtgaagcggcgatcgaaaat
ttactggaagaacgtcagaaagacggactctataagaacatatttgatttcatcaagcgg
gtaaatcagcgggcagttaacaaaaaatcgctggaagcactggtgatgtcgggtgctttc
gactgtttcccagagttacaccgtgcgcaatacttccataagcccgataatgacaacaca
aacggccttgacaagatcgtgaagtttgggcagcaggtatctgcaggctcgccgacggca
ggtggcttatttggctttgatgaattaccggaggtggagccaccgaagatcccaccttgt
gacctatggccattgatccagaagctgaacaatgaacgggaggtaactggtatctatatt
tccggacatccactggatgactaccgttttgagcagcggttctataacatgaactctgtg
caagaacttgttgaatatcaggcagaaatatccactcctggtagtactggcgggaaatcg
cgcgagcgtaatttccggctggcagtatatgtttccggtgcccaggaacggatatcccga
aataaccgacagtttggtatcatgtcaattgaagattattccggtaagtttgagtttgca
ctatggagtgaggactttatccgatttgggccttatctcaaagccgggttgtgtttgtat
gtaaatggaggctttaagtccaaacgattcaatgacaatgaatacgagttcaaagtaaat
agcatacagctattacaggaagtaaagaaaacgcatacgaagcaggtctacctggctacc
agaccaaagtttattacgcgtgaattcgtagacttcctgtgtgacaatttttctcggcat
ccgggtaacagccagctgtctgtacaactaaaggacctggatgataatctgacggtaaag
ttgcatacttttaacaaacatattgagatgaatgacgaattggcacattatctcacaaaa
gagcctaatattgaagtatacattgaaaccaaacaatag
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