Chitinophaga pendula: KTO58_13195
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Entry
KTO58_13195 CDS
T08407
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chf
Chitinophaga pendula
Pathway
chf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KTO58_13195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chf03400
]
KTO58_13195
Enzymes [BR:
chf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KTO58_13195
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KTO58_13195
DNA repair and recombination proteins [BR:
chf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KTO58_13195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
UCJ10109
LinkDB
All DBs
Position
3747449..3748228
Genome browser
AA seq
259 aa
AA seq
DB search
MPELPDLQVFSHNLQKLVKGKKISGVQVVKAKKLNVSAKQLEQALAGQAVQSVYREGKEL
YFAIGKQHVLAMHLMLHGKLLYGAAGGGHKHTVLELVFVDDTALTLTDYSSMAKPTLDPE
EPDAPDALSEAGGVKYLKAQLPQKRIHIKNFLLDQQLIRGIGNAYADEILWDARISPFSI
CNKLPADKISQLAKSIKKVLAAAEKKILASHPDIISGEVRDFMAVHHSKKAQSPTGADIH
HKVVNSRKTYYTDEQVLFE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaccttcaggtgtttagtcataacctgcaaaagctagttaagggg
aaaaagataagtggggtacaagtagtgaaggctaaaaagcttaatgtcagtgccaaacag
ttagagcaggcgttggcagggcaggctgtacaatctgtataccgggaaggtaaggagtta
tattttgctatcggtaagcaacatgtgcttgcgatgcacctgatgcttcacggcaagctc
ttgtatggggctgctggcggggggcataagcatacggtgctggagctggtatttgtggat
gatacggcattgacccttacggattatagtagtatggcgaagcctacgcttgatccggag
gaacctgatgctcccgatgccttgtcggaggcgggaggcgtcaaatacctgaaggcacag
ctaccgcagaagcgtatccatattaagaactttctgctggatcagcagctgatccggggc
ataggcaatgcctatgcggatgagatattatgggatgcgcgtatctctcctttttctatt
tgtaataagttacccgcggataaaatatcgcaattggcgaagtcaattaaaaaggtgttg
gcggcggcggagaaaaagatactggcatcgcatccggatattattagcggggaggtcagg
gattttatggcggtgcatcattccaaaaaagcgcaaagtccgacaggggcggacattcat
cataaggtggttaattcccgtaaaacatattatacggatgagcaagttctttttgagtag
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integrated database retrieval system
