Chitinophaga pendula: KTO58_18105
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Entry
KTO58_18105 CDS
T08407
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chf
Chitinophaga pendula
Pathway
chf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KTO58_18105 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chf03021
]
KTO58_18105 (rpoC)
03400 DNA repair and recombination proteins [BR:
chf03400
]
KTO58_18105 (rpoC)
Enzymes [BR:
chf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KTO58_18105 (rpoC)
Transcription machinery [BR:
chf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KTO58_18105 (rpoC)
DNA repair and recombination proteins [BR:
chf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KTO58_18105 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Fervidolysin_NPro-like
Motif
Other DBs
NCBI-ProteinID:
UCJ05596
LinkDB
All DBs
Position
complement(5007453..5011748)
Genome browser
AA seq
1431 aa
AA seq
DB search
MAIKKENRPKSNFNSITISLASPDAILERSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIRLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLETIVYYERYVIIQAGAKQEKGMNYGDLLTEEEYLDVLDTLPKDNQLLPD
EDPNKFIAKMGAEAVEMMLARIDLDSLSYQLRNQAATETSQQRKAEALKRLSVVEAFRDA
NNRVDNRPEWMVMQYIPVVPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVDRKEA
VVWDILENVLKGHPVMLNRAPTLHRLSIQAFQPKLVEGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYISKGKKSTDTEIVK
GEGKAFYSAEEVIIAYNEQRVDLHAHIRVKATVRTEANELETKLIETTVGRVIFNQFVPK
EAGYVNALLTKKSLREIIGDMIKYTDIPKTAKFLDDIKQLGFRTAFRGGLSFNINDLIIP
EVKQLMIDSASSEVDEVWDNYNMGLITNNERYNQIIDIWSRVDTKVTETLIRELATDKQG
FNSVYMMLDSGARGSKQQIKQLAGLRGLMAKPRKSGSTGSEIIENPILSNFKDGLNVLEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINEEDCGTLRGIATSALKDNEEVV
EPLYDRILGRTSLHDVFDPQTEELLVAAGQQITEDIAKHIEESSIETVEIRSVLTCESRR
GVCVRCYGKNLATGYTAQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSTSVESALPA
KFEGTVQFDGLRTTTYENNEGEKVQVVIGRTGELRIMDVKNDRLLITNNIPYGSTLLVKD
GQKVAKGDVICTWDPFNAVIVSEIAGNIRFDSIIEGITFREEADEQTGHREKVVIETKDK
NKIPSILIDGNKEVKSYNLPVGSHIVIEEGDAVRAGQVIVKIPRVIGKLRDITGGLPRVT
ELFEARNPSNPAIVSEIDGVVTFGNIKRGNREIIIESRESQVKKYLVPLTRHILVQDGDF
VKAGTALSDGSITPADILSIKGPFAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMRK
VTIEDPGDTRFLEGDTTDKFEFFEENDNIYDKKVVTEAGESAVLRAGQIVTLRQVREENS
ALRRSDKKLVEFRDANAATSSPLLLGITKASLGTHSWISAASFQETTKVLSSAAINGKTD
DMLGLKENVITGHLIPAGTGLREFENMIVGSKEEYDILTSSKEVFQFDEEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggccataaagaaagaaaatcgtcctaagtctaattttaacagtatcaccatcagcctg
gcttctccggatgcaatcctggagcgttcctacggtgaggtactgaaaccggaaaccatc
aactaccgtacttacaagccggagcgtgatggtcttttctgtgaaaggatattcgggcct
gttaaagactacgaatgctattgcggtaagtataagcgtatccgttataagggtattgta
tgcgaccgttgtggtgtagaagtaacggagaagaaagtacgtcgtgagagaatgggtcac
atccgtctggtagtgcccgttgtacatatatggtatttcaaatccctgcctaacaagatt
ggttacttgttgggtatgagctccaagaaactggaaacgatcgtatactatgaaagatat
gtgatcatccaggctggtgctaaacaagagaagggaatgaattacggtgatctgctgaca
gaggaagagtatctggatgtactggatactttgccgaaagacaatcagctgttgccggat
gaagatcctaacaaattcatcgctaagatgggtgcggaagcggtggaaatgatgctggcc
cgtattgatctggacagcctttcttaccagctgcgtaaccaggcagccactgaaacttcc
cagcagcgtaaagcggaggcgttgaaacgtctgagcgtagtggaagctttccgtgatgct
aacaatcgtgtagacaaccgtcctgagtggatggtgatgcaatatattcctgtagttccg
ccggaattacgtccgttggtgcctttggatggtggccgttttgcgtcttctgacctgaac
gatctttaccgccgggtgatcatccgtaacaaccgtttgaaacgtctgatcgagatcaag
gcgcctgaggtgatcttgagaaacgaaaagcgtatgctgcaggaagcggtagactccctg
ttcgacaactcccgtaaatccaatgcggtgaaggcagagggtggccgtgcgctgaaatcc
ctttctgacgtactgaaaggtaaacagggtcgtttccgtcagaacttgttgggtaaacgt
gtggactactccggtcgttctgtaatcgtggtaggtcctgagttgaaactgcatgagtgc
ggtctcccaaaagatatggcggcagagctgttcaaaccgtttatcatccgtaagctgatc
gaaagaggtatcgtaaagacggtaaaatctgcgaagaagctggtagataggaaagaagcg
gtggtttgggatatcctggagaatgtactgaaagggcatccggtgatgctgaaccgtgct
cctaccctccaccgtctgtccatccaggcattccagcctaaactggtggaaggtaaggcg
atacagctgcacccgctggtgtgttctgcgttcaacgccgactttgacggtgaccagatg
gcggtacacgtaccgttgagcaacgcagcgatactggaagcccagttgctgatgttgtct
tcacataacatccttaacccgcagaacggtacgccgatcaccctgccatctcaggacatg
gtactcggtctgtactatatctctaagggtaaaaaatctaccgatactgaaatcgtaaaa
ggagaaggtaaagcattctactctgccgaagaggtgatcatcgcctacaacgagcagcgt
gtagacctgcatgcgcatattcgtgtaaaagctaccgttcgtactgaagcgaatgagctg
gaaacgaaactgatagaaacaaccgtaggtcgcgtgatcttcaaccagttcgtaccaaaa
gaggctggttatgtgaatgcactgctgacgaagaaatcactgcgtgagatcatcggtgat
atgatcaaatacaccgacatcccgaaaactgcgaagttcctggatgatatcaagcagtta
ggtttccgtacggcgttccgcggtggtctgtcctttaacattaatgacctgatcatccct
gaagtgaagcaactgatgattgacagtgcttcttccgaagtggatgaggtgtgggataac
tacaacatgggtctgatcacgaacaacgagcgttacaaccagatcatcgacatctggtca
cgtgtggatactaaagtaaccgaaacgctgatccgcgagctggcaacagacaaacagggc
tttaactctgtgtacatgatgcttgactccggtgcgcgtggatccaaacaacagatcaaa
cagctggcgggtctaagaggattgatggcgaaaccacgtaagagtggttctaccggttcc
gagatcatcgagaacccgatcctttccaacttcaaggatggtctgaacgtattggagtac
ttcatctctacgcacggtgcgcgtaaaggtcttgcggatacggcattgaaaacggcggat
gcgggttacctgacccgtcgtctcgtggacgttgcccaggacgtggtgatcaacgaggaa
gattgtggtaccctgcgtggtattgctacttctgccctgaaagataacgaagaggtggta
gagccgctgtacgatcgtatcctgggtaggacttccctgcacgatgtatttgatcctcag
acagaagagctgctggtggctgccggtcagcaaatcacagaagatatcgctaagcacatc
gaagaaagctctatcgagaccgtagagatccgttctgtactgacttgtgaaagccgtcgt
ggtgtgtgtgtaagatgttatggtaaaaacctggcaacaggttataccgctcagcgtggt
gatgctgtaggtatcatcgcggcccagtccatcggtgagcctggtacacagctgacacta
cgtaccttccacgtgggtggtgtggctggttctacttccgttgaatcagcgctgcctgct
aaatttgaaggtactgtacagttcgatggtctgagaaccactacctacgaaaacaatgaa
ggtgaaaaagtacaggtggtaatcggtcgtaccggtgagttgcgtatcatggacgtgaaa
aacgatcgtctgctgatcaccaacaacatcccttatggttctaccctgctggtgaaagat
ggccagaaggtagccaaaggcgacgtgatctgtacatgggatccattcaacgccgtaatc
gtatctgagattgctggtaatatccgtttcgatagcatcatagaaggtatcaccttccgt
gaagaagcggatgagcagactggtcaccgtgagaaagtggtaattgaaaccaaggataag
aacaagatcccgtctatcctgatagatggtaataaagaggtgaaatcttacaacctcccg
gttggttctcacatcgttattgaagaaggcgatgcagtaagagctggtcaggtaattgtg
aagatacctcgtgtgatcggtaaactgcgtgacatcacgggtggtctgccgcgtgtaact
gaactgtttgaggcgcgtaacccgagcaaccctgctatcgtctctgagatcgatggtgtg
gtaacctttggtaacatcaaacgtggtaaccgcgagatcatcatcgaaagccgcgagagc
caggtgaagaaatacctggtgccattgacacgtcacatcctggtacaggacggtgacttc
gtgaaagcgggtactgcactgtctgatggttctatcacgccagccgatatcctctctatc
aaaggtccgtttgccgtacaggagtacctggtaaatgagatccaggaggtataccgtctg
cagggggtgaagatcaatgacaaacacattgaggtgatcgttcgccagatgatgcgtaag
gtaactatcgaagatccgggagatacccgcttcctcgagggggatactaccgataagttt
gaattctttgaagagaacgataacatctatgacaagaaggtagtaacagaagcaggcgaa
tctgcggtattgagagctggtcagatcgtaaccctgcgtcaggtaagagaagaaaactct
gccctgcgtcgttccgataagaaactggttgaattccgcgatgcgaatgctgctacttcc
agcccgctgcttctgggtattaccaaggcgtcactgggtacacatagctggatatctgcc
gcatccttccaggaaaccaccaaagtattgtcttctgccgcaatcaacggtaagacggat
gatatgctgggtctgaaagagaacgtaatcaccggtcacctgatacctgcaggtacaggt
ctgcgtgagttcgaaaacatgatcgtaggttccaaagaagaatacgacatcctgacctct
tcgaaagaagtgttccagtttgacgaagaagaatag
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