Capnocytophaga haemolytica: AXF12_06515
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Entry
AXF12_06515 CDS
T04287
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chg
Capnocytophaga haemolytica
Pathway
chg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF12_06515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chg03019
]
AXF12_06515
03009 Ribosome biogenesis [BR:
chg03009
]
AXF12_06515
Enzymes [BR:
chg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXF12_06515
Messenger RNA biogenesis [BR:
chg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF12_06515
Ribosome biogenesis [BR:
chg03009
]
Prokaryotic type
rRNA helicases
AXF12_06515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMD85192
UniProt:
A0AAX2GV59
LinkDB
All DBs
Position
complement(1447624..1449387)
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AA seq
587 aa
AA seq
DB search
MNLFTELGLSTPIIKAVEDMGFETPSEIQQKAIPILLENNTDMVALAQTGTGKTAAFGFP
LLQKIDPARRTTQALILSPTRELCLQITTELHHYAKYLPEIKVVAVYGGASIDEQARALR
KGAQIIVATPGRMQDMLRRNLADLSEIDFCVLDEADEMLNMGFYEDINAILSHTPEEKYT
WLFSATMPNEVAKIAKKFMRKPIEITVGNRNEAAKTVRHEYYLVNGRHRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRGKQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILPKSELKKIKTIEKI
IGQKFEQQPLPDGMEICEIQLYHLANNVKNIEVDPAIDDYLPAINKVLQDVDREELIKKI
FAVEFNRFFSYYKNAKSLNLTDEKGDTDRDSNNDEVRFFINIGEKDGYDWRTLKDFLRAT
LNMGKDDIFKVDVKNTFSFFNVDASEAQEVMETFADFKMDGRFINVEVSQKASGRDRGRK
KGRNRDEATRFSKKKETSSKKGKKKDSRSRKTAEAFENAFKKKKKRK
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttaccgaattagggctctcaacgcctattatcaaagccgtagaagatatg
ggctttgaaacaccctccgaaatccaacaaaaagcaatccctattttactggaaaacaac
acagatatggtagcacttgcccaaacgggtacaggaaaaacagctgcttttgggtttcca
ctcttgcaaaagatcgatccagcgcgtcgcactacgcaggcgctcatcctctcccctact
cgcgagctgtgtttgcaaattaccaccgaattgcaccattatgctaagtatcttcctgaa
ataaaggtcgtagcggtttacggtggggcaagcatcgatgaacaagcccgtgctttgcgc
aaaggagcccagatcattgttgcaacaccgggcagaatgcaggatatgctccgaagaaac
cttgctgacctctcagaaatagacttctgtgtgcttgatgaagccgatgaaatgcttaat
atgggcttctacgaggacatcaacgctatattatcgcatactcctgaggaaaaatacacg
tggttattctccgcaacgatgcccaacgaggtggcaaagattgctaaaaagtttatgcgc
aagcctatagagatcaccgtcggaaatcgcaatgaagccgctaagaccgtgcgccacgaa
tactatttggtcaatggaagacaccgttatgaggcactgaaaaggcttgccgatgctaat
cccgacatcttttcggtagtgttctgccgtaccaaacgcgatacacaggcagttgccgag
aaattaatcgaagatggctataatgcagccgctctccacggcgatttaagccaaaaccaa
cgtgatttagtgatgaaatccttccgaggaaagcaaatacaaatgcttgtagccaccgat
gtagccgcaagaggcattgatgtggatgatattacgcacgtgatacactatcaattgcct
gatgaaatagaaacttacacccatcgtagcggaagaacgggtcgcgcgggaaaatcgggc
gtttcgatggtcattctcccaaaaagtgaactaaaaaagataaaaaccattgagaaaatc
atcggtcagaagtttgaacagcaacctttacccgatgggatggagatctgcgaaatacaa
ctctaccatctggctaataacgtgaaaaacatcgaagtagaccccgctatcgacgactac
ctgcccgcgatcaacaaagttctacaggacgttgaccgtgaggaattgataaaaaagata
ttcgccgtggagttcaatcgcttcttcagctattacaagaatgccaaaagcctgaacctc
accgacgaaaagggtgatacagacagagatagcaacaacgatgaggtgcgattctttatc
aatattggtgaaaaggatggctacgactggcgcacgctgaaagactttttaagagccacc
cttaatatgggtaaggacgatatctttaaggtagatgtgaaaaacaccttctcattcttc
aatgttgatgcatcggaagctcaggaagtgatggaaaccttcgctgattttaagatggac
ggtcgttttatcaacgtggaagtctctcaaaaagccagcggacgcgatcgcggccgtaag
aagggcagaaatcgtgatgaagccactcgatttagcaaaaagaaggaaacttcctccaaa
aaagggaagaaaaaggacagcagaagccgaaaaactgccgaagccttcgagaacgccttt
aagaaaaagaagaaaagaaagtag
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