Capnocytophaga haemolytica: AXF12_08400
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Entry
AXF12_08400 CDS
T04287
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chg
Capnocytophaga haemolytica
Pathway
chg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF12_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chg03019
]
AXF12_08400
03400 DNA repair and recombination proteins [BR:
chg03400
]
AXF12_08400
Enzymes [BR:
chg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF12_08400
Messenger RNA biogenesis [BR:
chg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF12_08400
DNA repair and recombination proteins [BR:
chg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AXF12_08400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
AMD85530
UniProt:
A0AAX2GTT1
LinkDB
All DBs
Position
1860621..1862810
Genome browser
AA seq
729 aa
AA seq
DB search
MDMIKNDLQGALKHYFGFEAFKGHQEEIIRSVINKENTFVIMPTGGGKSLCYQLPALVSE
GTAIVISPLIALMKNQVDAMRGISSTDSIAHVLNSSLTKNEIREVMDDISAGRTKLLYVA
PESLIKEEYANFLKTVHISFVAVDEAHCISEWGHDFRPEYRNIRSIIERLGNNIPIVALT
ATATPKVQEDILKNLGILDAKVFKSSFNRPNLYYEVRPKTKSIDADIIRFIKTNPKKSGI
VYCLSRKKVEELTQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGI
DKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGHCIAFYSYKDVEKLEKFMIGKPIAEQ
EIGQALLQDIVAYAETSSSRRKFILHYFGEEFDEVNGEGANMDDNVRFPKEKKEAKEDVV
KLLNIILATKQKFKAKEIVNTLIGKVSALIKAHKIDEQEFFGIGKEKDDNYWMALLRQVM
VNGLIRKDIETYGVMFITDKGRAYLETVPSFMMTEDHNFDEEPEDTNTSSGATADSVLLE
MLKDLRKKVAKQKGVPPFVVLQDPSLEDMALKYPITITELTNVHGVGEGKAKKYGAPFVE
LIAKYVEENDILRPEDLIVKSTGSNSSLKLFIIQNIDRKLPLPDIAKAKGLEMSDFLKEM
EQIVYSGTKLNIDYWVNEILDEEQQEELHEYFMEADTDKISVASKEFAGDYEDEELRIYR
IKFISEVAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatatgattaagaatgatttacaaggtgccttgaagcattactttggttttgaagca
tttaaagggcatcaggaggagattatcaggagcgttatcaataaagagaatacgtttgtg
attatgcctactggtgggggtaaatcgctttgctatcagcttcctgcattggtgtcggaa
ggtacggcgattgtgatctcgccgctgattgcgctgatgaagaaccaagtagatgcgatg
cggggcatttcgtctaccgatagcattgcgcacgtactcaattcgtcattgaccaagaat
gagatccgcgaggtgatggatgacatcagtgcggggcgtacgaagctgctgtatgtggca
ccagagtcgctcatcaaggaggagtatgcaaactttcttaagacggttcacatctcgttt
gtagcggtggatgaggcacactgtatctcggaatgggggcacgactttcgtcctgagtac
cgcaatatacgttctatcattgagcgcctggggaataatattcctattgtagcgctaacg
gctacggctacgcctaaggtgcaggaggatattttgaagaacttgggtatcttggatgcg
aaggtgttcaagtcgtcgttcaaccgccctaatctttactatgaggtacgccctaagacg
aagagcattgatgcggacatcattcgtttcattaagacgaaccctaagaagtcgggcata
gtgtactgcctgagccgtaagaaggtggaggagctgacccagacgctgcaagtgaatggg
atttcggcagtgccttaccacgctgggttggacgctaagacgcgtgccaaacaccaggat
atgttcctaatggaagaggtggatgtggtggttgctaccattgcttttggtatggggatt
gataagcctgatgtgcggtttgtgattcactatgatattccaaagagtattgagagttat
tatcaggaaacggggcgcgcaggacgcgatggcggcgaggggcattgcattgcgttctac
tcatataaggatgttgagaagctcgagaagtttatgatagggaagcctattgctgagcaa
gagattggtcaggcgttgttgcaggacatcgtggcgtatgcagagacgtcgagctcaaga
cgtaagtttatcttgcattacttcggcgaggagttcgacgaggtaaatggcgaaggggct
aatatggacgacaatgtacgcttcccgaaagagaagaaggaggctaaggaagatgtagta
aagctgctaaatataatattagctacgaagcaaaagtttaaggctaaggagattgtcaat
acgctcattggtaaggtaagtgccctgatcaaagcacataagattgacgaacaggagttc
ttcggtattggtaaagaaaaggatgacaattattggatggcactgctcaggcaggtgatg
gtcaatgggctcattcgcaaggatattgagacctacggagtgatgtttatcactgataaa
ggtagggcttatttggagacagtaccttcgtttatgatgaccgaggatcacaactttgac
gaagagcctgaggacacaaatacttcttcgggagccactgctgactctgtgctcttagag
atgctgaaagacctgcgcaagaaggtggctaagcagaagggcgttcctccatttgtggtg
ttacaggatccgtcgctggaagatatggcactgaaataccctatcacaattaccgagctt
accaatgtacacggggttggtgaagggaaagcaaagaaatatggggctccttttgtggag
ctaattgcgaagtatgttgaggagaatgatattctgcgtcctgaggacttaatcgtgaag
tccacagggtctaactcctcgttgaagttgtttatcattcagaacattgaccgcaagttg
cctctgccagatattgctaaagcaaaaggtttagagatgagcgacttcctcaaagagatg
gaacagatagtgtacagtggtactaaacttaatattgactattgggtgaatgagattctt
gatgaggaacagcaagaggagctacacgagtactttatggaagcagatacggataagata
tcagtggcttcgaaggagtttgcaggtgattacgaggatgaagagctacgcatctaccgc
attaagttcatcagtgaggtggcaaactaa
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