Capnocytophaga haemolytica: AXF12_10485
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Entry
AXF12_10485 CDS
T04287
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chg
Capnocytophaga haemolytica
Pathway
chg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF12_10485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chg03019
]
AXF12_10485
03400 DNA repair and recombination proteins [BR:
chg03400
]
AXF12_10485
Enzymes [BR:
chg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF12_10485
Messenger RNA biogenesis [BR:
chg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF12_10485
DNA repair and recombination proteins [BR:
chg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AXF12_10485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
SKI
Motif
Other DBs
NCBI-ProteinID:
AMD85901
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All DBs
Position
2361893..2363656
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AA seq
587 aa
AA seq
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MKRFFCNMEQALDILKKYWGYEAFRSPQDAIIQSVLDGKDTLALMPTGGGKSVSFQVPAL
LREGICIVVSPLVALMTDQVEALKRRDIRALSLAGGLSHNDLERLLGNALYGNYKFLYLS
PERLQQETVREAIRQMNVNLIAIDEAHCVSHWGKDFRPAYLECKWLKETFPAVPMLALTA
SATPKVQKDIIAALTMQEPHIITTSLQRRNISYEVMEVEDKLFHLLQTLKLQKGSAIIYL
RSRSGTVQMANFLEGQGISATFFHGGLTADEKNKKLGMWITGDIRVMVATNAFGMGIDKP
DVRTVVHWDIPSTLEDYFQEAGRAGRDGKPSTAVLFYNELDLKTSEQQLHNNLVDLPYLK
YIYSRLNAYFVIAIGEGEEQTFGLLFPELCKRYNLQAQKAYNALLVLDRCSVISLSENFH
HRSSLFFKIESFQLMEYLKAHSHLKDLVLYLIRSFTGIYNRPISLRIEALAEQLHLNYKT
VIEQLEQLQKDDVAEFVNKEADLELTFRVPRDDDRTIDAIAKSVREYNHTKTTLQMAVYD
YINNESECRSMQLLRYFGQNDLTPCGRCSVCQKKHAKGYLRSEEASQ
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggtttttttgcaatatggagcaagcacttgatatactcaaaaagtactggggc
tacgaggctttccgaagcccacaggacgctattattcaatcggtattagatgggaaagat
acccttgcgctaatgcctacgggtgggggaaaatcggtaagctttcaagtccctgcttta
ttaagagagggcatctgtattgttgtttcgcccttagtagcgctaatgaccgaccaagta
gaagccttaaagcgccgagatatcagagcgttatcacttgcaggaggcctttcacacaac
gacttagaacgcttgctgggaaacgccctttacggcaattacaaattcctatacctttct
ccagagcgcttacagcaagaaacagttcgtgaggctataagacagatgaacgtcaacctc
attgctatcgacgaggcacactgtgtatcgcactggggcaaagattttcgccctgcttac
ttagagtgtaagtggcttaaagaaacctttccagcagtgccaatgcttgccctgacagcc
tcagcaaccccaaaagtacagaaagacattatcgcagcactcacaatgcaggagcctcac
atcatcaccacttcactacaacgtcgcaatatcagttacgaagtgatggaagtagaagat
aaacttttccacttactacaaactttaaaactacaaaagggaagtgctatcatatacctt
aggagtcgtagcggtactgtacaaatggctaatttcttagaaggacagggcatttcagcg
acttttttccacggaggacttaccgctgatgagaaaaacaaaaagctcgggatgtggatc
actggcgacataagagtaatggttgccaccaacgcttttggtatgggaatcgataagccc
gatgtgcgcacggtcgtacattgggatattccttctacccttgaagattacttccaagaa
gcggggcgtgcagggcgcgatggcaagccatcaacagctgttctgttctacaatgagctt
gaccttaagacttctgaacagcaactgcataataacctcgttgacctcccctatttgaaa
tacatctacagcaggctgaatgcttactttgtgatagccatcggtgagggcgaagaacag
actttcggcttgctctttcctgagctctgcaagcggtataacctacaagcacaaaaagcg
tacaatgcgctgctggtattggatcgctgctcggtaatctcgctatcggagaactttcat
caccgatcgtcattgtttttcaagatagaaagtttccagctaatggagtacctgaaagca
cacagccacttgaaagatctcgtgctttacctgatacggagctttacaggcatctacaac
agacctatttcactgaggatagaagcgttagcagagcagctacacctaaattacaaaacg
gttatcgagcaattagaacaactgcaaaaggatgacgttgctgagtttgtaaacaaagaa
gctgacttagagctcaccttcagagtgccccgcgacgacgatcgcaccatagatgccatc
gcaaaaagcgtcagagagtacaaccacacgaaaacaactctccaaatggctgtttatgat
tatattaacaacgaaagcgaatgtcgaagtatgcaattgttgcggtatttcgggcaaaat
gaccttaccccttgtggcagatgcagcgtttgtcagaaaaagcacgctaaggggtatctc
cgcagcgaagaagcctcgcaatga
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