Chryseobacterium glaciei: A0O34_03235
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Entry
A0O34_03235 CDS
T04575
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chh
Chryseobacterium glaciei
Pathway
chh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0O34_03235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chh03019
]
A0O34_03235
Enzymes [BR:
chh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A0O34_03235
Messenger RNA biogenesis [BR:
chh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0O34_03235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UvrD-helicase
Cas3-like_C_2
AAA_7
HEM4
AAA_22
Phage_integrase
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANF49619
UniProt:
A0A172XRI8
LinkDB
All DBs
Position
730556..731833
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AA seq
425 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILNGRDFLGCAQTGTGKTAAFSIPIL
QNLSKNKVQNKHIKALILTPTRELAIQIEENIKAYGKYLPLKELVIFGGVKQGSQETALR
RGVDILVATPGRLLDFIAQGIVSLKNIEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQT
LFFSATMPSEIQKLADSILNNPVKVEVTPVSSTAETIKQSVYFVEKDDKLDLLTHILQND
ISDSVLVFSRTKHGADKIARKLQASKISTEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGSSISFVDGLDLLNLKNTEKL
IGMKIPIVKDHPFHTDNLVAQKRDSNNKPSGPRPERPKSQTANTKKKPAVDAGKKPKNKS
FFRKK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacctaaacctaatagaacccattgcaaaagcaattcaggagcaagga
tacaccaccccaactcctattcaggaaagatctattcctgatatcttaaatggcagagac
tttctaggatgtgcacaaaccggaaccggaaaaacggccgctttttccattcctatttta
caaaatttatccaaaaataaagtacaaaacaaacatataaaagctcttattctgactccg
acaagagaattggcgatacagattgaagagaatattaaagcttacggaaaataccttcca
ttaaaggaattggtgattttcggaggggtaaaacaaggaagccaggaaactgctctcaga
agaggagttgatattttggtggcgactccgggaagattacttgattttattgctcaggga
atcgtaagtttaaaaaatattgaaatattcgtacttgatgaagccgacagaatgctggat
atgggttttgtacatgatgtaaaaagagttattaaacttttacctcagagaagacaaact
ttatttttctcggcaacaatgccttctgaaatccagaaattagcagattctatcttaaat
aatcctgtaaaagtagaagttactcctgtttcttcaacagctgaaaccatcaaacaatcg
gtttattttgttgaaaaagatgataaactggatcttcttacgcatattttgcagaatgat
atttctgattctgttttagtcttttcaagaacgaaacatggagcggataaaatcgcaaga
aaacttcaagcaagcaaaatatctacggaagctattcacggaaacaaatctcagaatgcc
cgtcagaatgctttaaataattttaaatcaggaaagacaagagttcttgttgcaacagat
attgcagcaagaggaattgatattgacgagcttaaatacgtagtaaatttcgaactttct
gatgtttctgaaacatacgttcacagaatcggaagaacgggaagagcgggtgcagaagga
agttcaatctcatttgttgatggacttgacttattaaacctgaaaaacaccgaaaagctg
attggaatgaaaattcctattgtaaaagatcaccctttccacacagataatttggtggcg
cagaaaagagattctaataataaaccttctggtccaagacctgaaagaccaaaatctcaa
actgccaatactaaaaagaaacctgcagtagatgcagggaaaaagcctaaaaacaagagc
tttttcaggaaaaaataa
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