Chryseobacterium glaciei: A0O34_08060
Help
Entry
A0O34_08060 CDS
T04575
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chh
Chryseobacterium glaciei
Pathway
chh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0O34_08060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chh03021
]
A0O34_08060
03019 Messenger RNA biogenesis [BR:
chh03019
]
A0O34_08060
Transcription machinery [BR:
chh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A0O34_08060
Messenger RNA biogenesis [BR:
chh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A0O34_08060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
ANF50476
UniProt:
A0A172XU89
LinkDB
All DBs
Position
complement(1817095..1819014)
Genome browser
AA seq
639 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSNENDKIFAVLDFQASNPKVAKDYFNATESS
MNTEENPPEKEAKAPVKKAAPKRTPKPKPEAKAPVETKPKEEEKAVEKEIVSEEVTPQAP
KAETANDDAAAKAEAARKKRKRLPTNTSNVESPVQEKPQAPKNTEPQESAPAAEEKPSNP
QQQPQARPQKGQNHPQNSGNQHKNQNPNQGQSSNQNPNQGQAQNPNQGQNQNQNQNQHSN
QNQNPNQNQNRNSDRNEDHQEHHRKEFNFDGMVSIEGVLEILPDNYGFLRSSDFSYISSP
DDVYVSTAQIRNFGLKTGDTVRGIVRLPKEGEKYFSLLKPVEVNGRDLAFIKDRVAFEYL
TPLFPEEKFNLAGDNSTMSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIASNH
PEVYMMVLLIDERPEEVTDMERSVNAEVIASTFDEAADKHVKVANLVLAKAQRMVECGHD
VVILLDSITRLARAYNTVTPASGKVLSGGVDANALHKPKRFFGAARKIEGGGSLTIIATA
LIDTGSKMDEVIFEEFKGTGNMELQLDRKIANRRIYPAIDLISSSTRRDDLLLDEVTSQR
MWIFRKYLSEMNPIEAMEFVNKNIRGTLNNEEFLMSMNK
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaag
gatttgggcgttaaagttgcaagaaacagcaatgagaatgataaaatctttgcagttctt
gattttcaggcttctaaccctaaagttgcaaaagattatttcaacgccacagaaagcagt
atgaatactgaagaaaatccgccagagaaagaagcgaaagctcctgtaaaaaaggctgct
ccgaaaaggacgccaaaaccaaagcctgaggcaaaagctccggtagaaacaaaaccaaaa
gaagaagaaaaagctgttgaaaaagagattgtttccgaagaagtaacacctcaagctcca
aaagctgaaactgcaaatgatgatgcagcggcaaaggcagaagctgcaaggaaaaaaaga
aaaagacttcctacaaatacaagtaatgtagaaagtcctgttcaggaaaaacctcaagct
cctaaaaacacagaacctcaggaatctgctccagcagcagaagaaaagcctagcaaccct
caacaacaaccgcaggcaagacctcaaaaaggacaaaaccatccacagaacagtggaaac
caacataaaaatcaaaacccgaaccaaggtcagagctcaaatcaaaatcctaatcaggga
caggctcaaaaccctaaccaagggcaaaaccagaatcaaaaccaaaaccaacattcgaat
caaaaccagaaccctaatcaaaatcaaaacaggaattctgacagaaacgaagatcatcag
gaacaccatagaaaggagttcaactttgatggaatggttagtattgaaggggttttagag
atattaccggataactacggatttttacgttcttcagattttagctatatttcttctccg
gatgatgtatatgtttctactgcacagatcagaaatttcgggttgaaaactggtgatacg
gtaagaggtattgtaagacttccaaaagaaggtgaaaaatacttttctttattaaaacca
gtagaagtgaacggccgtgatcttgcatttattaaagatcgtgttgcttttgaatattta
actccactttttcctgaagagaaattcaacttggcaggagataactctacaatgtctaca
agaattgttgatttatttgcaccaatcgggaagggacaaagagcaatgatcgttgcacag
ccgaaaaccggtaaaacgatgttgttgaaagatattgctaattctatcgcatccaatcac
ccggaagtatatatgatggttcttttgatcgacgaacgtcctgaagaagttaccgatatg
gaaagaagtgtaaatgcagaagttattgcatctacatttgatgaagcggcagataaacac
gtaaaagttgccaaccttgttttagcgaaagctcagagaatggttgaatgcggacatgat
gttgtgattttattagactcaattacaagattagcaagagcttacaatacggtaacgcct
gcttctggtaaagttctttctggaggtgttgatgcgaatgctcttcacaagccgaaaaga
ttcttcggagcggcaagaaaaattgaaggtggtggatctttaacgattattgcaacagca
cttatcgatacaggttctaaaatggatgaagttatttttgaagaattcaaaggtaccgga
aacatggaacttcaattagacagaaaaattgctaacagaagaatttatcctgctattgat
cttatttcttccagtacaagaagagatgatctattgctagatgaggttacttctcagaga
atgtggatcttcagaaaatatctttctgaaatgaatcctattgaagcaatggaatttgta
aataaaaacatcagaggaactttaaataatgaagagttcttgatgtccatgaataaataa
DBGET
integrated database retrieval system
