Chryseobacterium glaciei: A0O34_18180
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Entry
A0O34_18180 CDS
T04575
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chh
Chryseobacterium glaciei
Pathway
chh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0O34_18180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chh03019
]
A0O34_18180
03400 DNA repair and recombination proteins [BR:
chh03400
]
A0O34_18180
Enzymes [BR:
chh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0O34_18180
Messenger RNA biogenesis [BR:
chh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0O34_18180
DNA repair and recombination proteins [BR:
chh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0O34_18180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ANF52324
UniProt:
A0A172XZD3
LinkDB
All DBs
Position
4040144..4042348
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AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEEIIENLLNGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSESGVAHVLNSSLNKTQTKQVFDDITSGRTKLLYVA
PESLIKEDYVDFFKDVNISFVAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTA
TATPKVQDDIQKTLGMTNALVFKESFNRANLYYEVRPKVNVDREIVKFINQRKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVTNQDKFLMEDADVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGYCLSFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGEIFDPITGEGAKMCDNASNPPKLKDATDDLKKV
LELININGEKFKSKDLISVIVGKESAVTKSYKLEQTSYFGFGKEDKDNYWKTILRQATVQ
NFLQKDIETYGVLKISEKGQLVLKGQLEHSFLIAEDREFDLSQTKAESDQVQMQANGSLD
QKLFEQLKDLRKKVAKKHGIPPYTVFMDPSLEDMTVQYPITLDEIAKIYGVGEGKAKKYG
KEFADFIKTYVEDNNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSIDD
LLKEMERIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMTESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcgggcgaattgaaaaaatatttcgggttttctacc
ttcaaaggtcaacaagaggagatcattgaaaatctactaaacggaaaggatatatttgtt
ttgatgcccacaggaggggggaagtctttatgctaccagcttccagctcttatttctgaa
ggaaccgcaattgtggtttcgcctttgatagcattaatgaagaatcaggtggatgctgta
aatggcctttcatctgaaagcggagttgcgcacgttttaaattcatcattaaacaaaacg
cagaccaaacaggtttttgacgatattacaagtggtagaactaaactgttatatgtagct
ccggaatctttgatcaaagaagattatgttgatttctttaaagatgtcaatatttctttc
gttgccatagatgaggcgcactgtatttcagagtggggacacgatttcagaccggaatac
agaaacttaaaatctattatcgataaaattgccgatgttccggtgattgcattaacggca
acggcaactccaaaagttcaggatgatatccagaaaacgttgggaatgaccaatgcttta
gtctttaaagaaagttttaaccgtgcgaatttgtattatgaagttcgtccaaaggtgaat
gtagatagagagatcgttaaatttatcaatcagagaaaaggaaaatcaggaattgtttat
tgtttaagccgaagaaaggttgaagaatttgctcaacttttacaggtgaacggaattaat
gcacttccttatcatgccggacttgatcaaaaggtacgagttaccaatcaggataaattt
ttgatggaagatgccgatgtgattgtagctacgatcgcattcggaatgggaatcgataaa
cctgacgtacgatttgtaattcactacgatttcccgaaatcactggaaagttattatcag
gaaacgggacgcgcaggtcgggatggtggcgaaggctattgcctgtcgttttacgatcct
aaagatattgagaaattagaaaaattcttagctcagaagcctgtttccgaaagagaaatc
ggattacagcttttaaatgaagtcgttggttacgctgaaacttcaatgagcagaagacag
tatattctgtattattttggtgaaatttttgatcctataacaggtgaaggagccaaaatg
tgcgataatgcatccaatcctccaaaactgaaagatgcaacggatgatctgaaaaaagtg
ttggaactaatcaacataaatggagagaaattcaaatctaaagatttgatttctgtgatt
gtcggaaaggaaagtgccgttacaaaatcgtataaattagaacaaacttcttatttcggt
tttggaaaagaagataaagataattattggaaaacgattttaagacaagctacggttcag
aattttcttcaaaaagatattgagacttatggtgttttaaaaatttctgaaaaaggacaa
ttggttttaaaaggacagcttgaacattcattcttaattgctgaagaccgagaatttgat
ctttctcagacaaaagcagaaagtgatcaggttcaaatgcaggcgaatggaagtttagac
caaaaattatttgaacaattaaaagatcttagaaaaaaagtcgcaaaaaagcacggaatt
ccaccttatacggtgttcatggatccgagtttggaagatatgacggttcaatatccgatc
acattggacgaaatcgccaaaatctacggagttggagaaggaaaagccaaaaaatacggg
aaagaatttgcagattttataaagacttacgttgaagacaataacatagaacgtactcag
gatatggtgttgaagcaggttgcgaacaaatccagccataaagttttcatcattcagagt
acggataaaaaaattgaccttgaagatattgcaagagccaaaaacctatcaatagatgat
ctgttgaaagaaatggaacgtattgtatatcaaggtacaaagttaaatatcgattattat
atcgaagataattttgatgaagatattgtagacggtttcatggaattcatgaccgaatct
gaaagcgacagtatgaaagtcttgttagacgaatttggagatgaactttctgatgaagaa
gtgagaatgttgagaatcaagtttatcagtgacgttgctaattaa
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