Chromobacterium sp. HL1: AB1Z25_06800
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Entry
AB1Z25_06800 CDS
T12096
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chhl Chromobacterium sp. HL1
Pathway
chhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB1Z25_06800 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chhl03021
]
AB1Z25_06800 (rho)
03019 Messenger RNA biogenesis [BR:
chhl03019
]
AB1Z25_06800 (rho)
Transcription machinery [BR:
chhl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AB1Z25_06800 (rho)
Messenger RNA biogenesis [BR:
chhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB1Z25_06800 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_22
AAA
AAA_5
ResIII
Motif
Other DBs
NCBI-ProteinID:
YEQ09751
LinkDB
All DBs
Position
1451917..1453173
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AA seq
418 aa
AA seq
DB search
MHLSDLKHLHVSELVEMAISNEIDGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN
GEAPENSKHKILFENLTPLFPTEQFKLERDIRAEENITGRIIDLISPIGKGQRGLLVAPP
KSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNSEIHLERRMAEKRIFPALNI
NRSGTRREELLIPQDQLQRIWVLRKLLYPMDDLEAMEFLQDKIKATKSNQQFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacttatctgatctaaaacatcttcatgtttccgaactcgttgaaatggccatttcc
aacgagatcgacggggccaaccgactgcgcaagcaggacttgatcttcgccttgctgaaa
aaccaggccaaaaaaggcgagagcattttcggtgaaggtaccctggaagtgctgccggac
ggtttcggtttcctgcgcagcccggacacctcctacctggccggcccggacgacatctat
gtcagcccgtcgcagattcgtcgcttcaacctgcataccggcgattcgatcgaaggcgag
atccgcaccccgaaagacggcgagcgttacttcgcgctggtcaaggtggacaaggtcaac
ggcgaagcgccggagaactccaagcacaagattctgttcgagaacctgacgccgctgttc
cccaccgagcagttcaagctggaacgcgacatccgcgccgaagagaacatcaccggccgc
atcatcgacctgatctcgccgataggcaaaggccagcgcggcctgctggtggcgccgccg
aagtctggcaagaccgtgatgctgcagcacatcgcccacgccatcaccgccaaccatccg
gaagcggtgctgatcgtgttgctgatcgacgagcgtccggaggaagtgaccgagatgcag
cgttcggtcaagggcgaagtggtgtcttccaccttcgacgagccggccacccgccacgtg
caagtggccgagatggtgatcgagaaggccaagcgcctggtggaacacaaaaaggacgtg
gtgatcctgctggactccatcacccgtctggcgcgcgcctacaacaccgtggtgccggcc
tccggcaaggtgctgaccggcggcgtggacgccaacgcgctgcagcgcccgaagcgcttt
ttcggcgccgcgcgcaatgtggaagagggcggcagcctgaccatcatcgccaccgcgctg
atcgatactggcagccgcatggacgatgtgatctacgaagaattcaagggcaccggcaac
agcgaaatccatctggaacgccgcatggccgagaagcgcattttcccggcgctgaacatc
aaccgttccggcacccgtcgcgaagagctgctgattccgcaggaccaattgcagcgcatc
tgggtactgcgcaagctgctctacccgatggacgatctggaggcgatggaattcctgcag
gacaagatcaaggccaccaagtcgaaccagcagttcttcgactcgatgcgccgctga
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