Colletotrichum higginsianum: CH63R_00935
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Entry
CH63R_00935 CDS
T08176
Name
(RefSeq) LSM domain-containing protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
chig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CH63R_00935
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_00935
03041 Spliceosome [BR:
chig03041
]
CH63R_00935
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CH63R_00935
mRNA degradation factors
5'-3' decay
Lsm complex
CH63R_00935
Spliceosome [BR:
chig03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CH63R_00935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
28860017
NCBI-ProteinID:
XP_018164272
UniProt:
H1W4L1
LinkDB
All DBs
Position
1
Genome browser
AA seq
99 aa
AA seq
DB search
MATLGGYLNKKVLIVTSDSRILVGTLEAADQSTNLVLSAAQERVIQTPESGEPSVQVPLG
LYLVRGDNVCTIGLVDEALDDSINWTEVKGSAIGGTKHV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccttggaggttacctcaacaagaaagtccttattgtgacttcggactcgaga
attcttgtcggcaccttggaggccgcagaccagtccaccaacctcgtcctcagcgccgcc
caggagcgagtaatccagacccccgagagcggagaaccatcggtccaggtacccctcggc
ctctacctcgtccggggcgataacgtttgcaccatcggcctggtggacgaggcactagac
gacagcatcaactggaccgaggtcaagggctccgccattggagggaccaagcacgtatga
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