KEGG   Colletotrichum higginsianum: CH63R_00935
Entry
CH63R_00935       CDS       T08176                                 
Name
(RefSeq) LSM domain-containing protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
chig  Colletotrichum higginsianum
Pathway
chig03018  RNA degradation
chig03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:chig00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CH63R_00935
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH63R_00935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:chig03019]
    CH63R_00935
   03041 Spliceosome [BR:chig03041]
    CH63R_00935
Messenger RNA biogenesis [BR:chig03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CH63R_00935
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CH63R_00935
Spliceosome [BR:chig03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CH63R_00935
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 28860017
NCBI-ProteinID: XP_018164272
UniProt: H1W4L1
LinkDB
Position
1
AA seq 99 aa
MATLGGYLNKKVLIVTSDSRILVGTLEAADQSTNLVLSAAQERVIQTPESGEPSVQVPLG
LYLVRGDNVCTIGLVDEALDDSINWTEVKGSAIGGTKHV
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgacccttggaggttacctcaacaagaaagtccttattgtgacttcggactcgaga
attcttgtcggcaccttggaggccgcagaccagtccaccaacctcgtcctcagcgccgcc
caggagcgagtaatccagacccccgagagcggagaaccatcggtccaggtacccctcggc
ctctacctcgtccggggcgataacgtttgcaccatcggcctggtggacgaggcactagac
gacagcatcaactggaccgaggtcaagggctccgccattggagggaccaagcacgtatga

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