Colletotrichum higginsianum: CH63R_01094
Help
Entry
CH63R_01094 CDS
T08176
Name
(RefSeq) DNA-directed RNA polymerase
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH63R_01094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_01094
Enzymes [BR:
chig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CH63R_01094
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
CH63R_01094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
DUF7479
Motif
Other DBs
NCBI-GeneID:
28860176
NCBI-ProteinID:
XP_018164431
UniProt:
H1UXI4
LinkDB
All DBs
Position
1:complement(3686422..3690164)
Genome browser
AA seq
1225 aa
AA seq
DB search
MAPSATNTEWDHQYNTLRRENLFRNPPKDHTAYPALQEAVSPHIDSFNALFRTDGKSLLA
RGLEDIGTKTYLDGDDRAGLEGKNRLSIRIKGVSLQKSQLPPSNKFARNREILPAECRER
HCTYRGRLSATFEYRINNGDPKEFVRELGQVPIMVKSNRCHLEGNSPAQLVQRKEESEEL
GGYFIVNGIEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPDETSQTNVL
HYLSDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLIGLSGSKSAKNTFLTDRV
ELLLRTYKSYGLYSKTETRAYLGEKFRVVLGVPDTMSNYDVGTEFLRKIVLVHLGNINVT
EKEDNDKFRMLLFMIRKLYALVAGDCSVDNPDAVQNQEVLLGGFLYGMILKERLEEFLTT
AVRLSLREWTRKHPATPFTSQDFAKEFPANIFRHANENIGNGLEYFLSTGNLTSPSGLDL
QQTAGFTVVAEKLNFLRFLSHFRMIHRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGSP
CGLLNHLAHKCKIMTEAVDASKIPGLVAELGAVETSSAATDESVVVMLDGRIVGFCTPRE
SLRIADTLRYWKVEGTHGVPLQLEVGYVPPSNGGSYPGIYLASAPARMVRPVKYLPLDKE
DFVGPHEQPYMSIAVVENEIVSGESTHVEVTPTNMLSILANMTPFSDFNQSPRNMYQCQM
GKQTMGTPATALRYRTDNKMYRLQSGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGY
DMDDAMILNKSAHERGFGHGTIYKTKKITLKDESRTRAVKNISKLFGFAPGGFVKGHYRG
QLDEDGLPYVGRLVQEGDVLCAWHTVSADYSGKLINLDGQTHYEKYKESETAFVEEVRVI
GSETGNEPAQTISIKLRVPRSPVIGDKFSSRHGQKGVASQKWPAVDMPFSESGMQPDVII
NPHAFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKFNEENTAADYFGHQLMKAGYNYHG
NEPMYSGITGEELAADIYVGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGI
RVGEMERDALLAHGTAFLLQDRLLNCSDYTRSWICRTCGSFLSVQPTVSPFVGKKKQVTT
VRCRNCATQLDAGDAESAAKVEGEIWEDGQGNQWVGGENTTLVVVPGALKFLDVELAAMG
VKLKYRIDSRDAPRKGPLKPMSSLP
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggccccttcggcgaccaataccgagtgggatcaccagtacaacaccctccgccgtgag
aacctttttcgcaaccccccaaaagatcatacagcctaccctgccctccaagaggccgtc
agccctcacatcgactcgttcaatgccctgttcagaaccgacggcaagagcctcctcgct
cgtggcctagaggatatcggcaccaagacctacctcgacggcgatgacagggctggcctc
gaaggcaagaaccgcctgtccattcgcatcaagggcgtgtcactacagaagtcccagctg
cccccctccaacaagtttgccaggaatcgcgaaatcttgcctgccgaatgcagagagcgc
cactgcacgtaccgaggaagactttctgctaccttcgagtacagaatcaacaatggcgat
cccaaggaattcgttcgagagcttggtcaagtgcccatcatggtcaagtccaacagatgc
cacctggagggcaactcgccagcgcagttggtacagagaaaagaggaatccgaggaactt
ggcggctatttcatcgttaacggtatcgaaaaaattattcggatgctgcaagtcaaccgc
agaaacttccccatggcgatcaaccgaccaagttttcaaaatcgtggccaaggctacacc
ccctacggtatcattctccgatccgttcgacccgatgagacatctcagaccaacgtcttg
cactacttaagcgacggcaacatgactttccgcttctcctggagaaagaatgagtatctt
gtgccggtcatgatgatcctgaaggcgctggtggagacaaacgaccgcgaaatctttgag
ggtcttatcggtctgtctggatccaagtcggccaagaacaccttcttgacggatcgtgtt
gagctgcttctccggacatacaagtcttatggtctgtacagcaaaaccgagacaagagcc
tacctcggtgagaagttccgcgtggtgttgggcgtgccagacaccatgtccaattacgat
gttggtacagagttcctgcgcaagatcgttcttgtccaccttggcaacattaatgtcacc
gaaaaggaggataacgacaagttccggatgcttcttttcatgatcaggaagctgtatgct
cttgtggctggcgattgctcagtcgacaaccctgatgccgtccagaaccaggaggtactt
ctgggcggttttctctacggtatgattttgaaggagcgcttggaagagttcctgaccact
gctgtccgtctatcattgcgagaatggaccagaaaacatcctgctacgcccttcacatca
caggactttgccaaggagttccctgccaacatcttcaggcacgccaacgagaacatcgga
aacggactggaatactttctctccactggtaaccttaccagtccatctggtcttgacctg
cagcaaactgccggttttacggttgttgcggaaaagctcaatttccttcgtttccttagt
cattttcgaatgatccacagaggtgcctttttcgccgagctgaagacgacgacagtcaga
aagcttctgcccgagtcctggggcttcatgtgcccggtacacactcctgatggttctccc
tgtggtttgctaaaccatctggcccacaagtgcaaaatcatgacggaagccgtcgatgca
tccaagattcccggtctcgttgcggagttaggtgccgtggagacgtcttccgccgcaacg
gatgagagcgtcgtcgtcatgcttgacggcagaatcgttggcttctgcacacctcgcgag
tctcttagaattgcagatactctccgctactggaaggttgagggcactcacggtgtacct
ttgcaactcgaggttggatatgtccctccttccaacggcggatcttaccctggtatctat
ctggcgtctgccccggcgcgtatggtcagacccgtcaaatatcttccccttgacaaggag
gatttcgttggtcctcacgagcagccttacatgtccattgccgtcgtggagaacgagatt
gtgtccggagagtcaacccacgtggaggtcacacccacgaatatgctttccattctggcc
aacatgacaccgttctcagacttcaaccagtcccccagaaacatgtaccagtgtcagatg
ggtaagcaaactatgggaacaccggcaactgccctgcggtatcgaacagacaacaagatg
taccgcttgcagagcggccagacgcccgttgtccgatcgcctctgcacaacacctacgga
ttcgacaacttccccaacgggtttaacgctgttgtggcggttatctcgtacaccggttac
gacatggacgacgccatgatcctgaataagtcggcgcacgagagaggattcggacacggt
accatttacaagacaaagaagatcactctcaaggacgagtcaaggacccgagccgtcaag
aacatttccaagctgtttggctttgcccctggcggctttgtcaaggggcactatcgcggt
cagctcgacgaggacggtctgccctatgttggccgactggtccaggaaggagatgtcctc
tgcgcgtggcacacggtatcagccgactacagcggcaaactcatcaacctcgacggccag
acgcactacgagaagtacaaggaatccgagacggctttcgtcgaggaggtgcgtgtgatt
ggcagtgagacgggtaacgaacctgcccagacgatctccatcaagctcagagttcctcga
tcgcccgtcattggtgacaagttctcttcccgtcacggacagaagggtgttgcctcacag
aagtggccggccgtcgacatgccattctctgagtccggcatgcagcccgatgttatcatc
aaccctcacgcttttccgtcccgtatgaccatcggcatgttcgtcgagtcacttgctgga
aaggcaggagctcttcatggattggcgcaagattcgacgccgttcaagttcaatgaagag
aacactgctgccgactactttggccaccagctgatgaaggctggatacaattaccacggc
aacgagcccatgtactccggtatcactggtgaagaactggcggctgacatttacgtcggc
gttgtttactatcagcgtctgcgtcacatggtcaacgacaagtaccaggtgcgaacgact
ggaccagttgtccctacgactgggcaacccatcaaaggtagaaagcgcggtggtggtatc
cgtgtgggtgaaatggagcgtgatgcgctgcttgctcacggcacggccttcctgctgcag
gatcgtctgctcaactgctccgattacacacgatcctggatctgccgaacctgtggctcg
ttcctctcggttcagccgacggtctcgccttttgtgggtaagaagaagcaggtaacgaca
gtccgctgcagaaactgcgcaacccagctcgatgccggcgacgcggagagcgccgccaag
gtagagggggagatttgggaggatggacagggcaaccagtgggttggaggcgagaacacc
acgcttgtcgtcgttccgggtgcactcaagtttttggatgtagaattggcggctatgggt
gtcaagctgaagtatcgcatcgactctcgcgatgcgcctcgtaagggccccttgaagccc
atgtcatcattaccgtag
DBGET
integrated database retrieval system