Colletotrichum higginsianum: CH63R_01104
Help
Entry
CH63R_01104 CDS
T08176
Name
(RefSeq) Transcription initiation factor IIF
KO
K03139
transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CH63R_01104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_01104
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
CH63R_01104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_beta_N
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
28860186
NCBI-ProteinID:
XP_018164441
UniProt:
A0A1B7YVF1
LinkDB
All DBs
Position
1:3713686..3715109
Genome browser
AA seq
419 aa
AA seq
DB search
MQGTLLCFLPACLTSVLRSTILPALDVIAKKRLHLNLPILGRQRNLVARPAIPIMADSTY
IKPEPYIKPDPEAVTASPLDDDDLYEDAGDLEFFDQYSDQGSFGQAYLARVPKDLWEAWD
SLPDDAEIEVGTMRQWDVVRPDGSVEHRFKMLLNSDRAEHQLMPKEYDLEMGKELARSTF
VFTEEDLPGFKAKSKARTDAANAGIPARFLRPKADKVEKKPFEKGRRWQPYYRKAIPKKT
KIAARIQYELACKPVDNAESQAILQRKQVEAQRPKHTLQIMEQRAANSIIHHGSAAAVEK
FGSFIKTSAPTKATKPKKAENRAARMSEEQLLDGLMEAFRRYEYWKMSILKARFDQPEAF
LRQTLEKIAVLNRSGIHANEWSLQEHLKSMASGATSETAPEEAAADDDDDDEVVMEDVV
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcagggtaccttgctctgcttcctgcctgcttgccttacctcagtgctcaggtccacc
atacttcctgccttggacgtcattgcaaagaaacgacttcacctcaacctcccgattctg
ggacgccaaaggaacctcgtagccagaccagccattcccatcatggcggactccacgtac
atcaaacctgagccatacatcaagcccgatcctgaagctgtgacagcttctcccctcgac
gacgacgacctgtacgaagatgccggcgatcttgagtttttcgaccaatacagcgaccag
ggatcctttggccaagcatatttagcccgagtacccaaggacttgtgggaggcatgggac
agcttgccagatgacgccgaaatcgaggttggcactatgcgacagtgggacgttgtgcgc
ccagatggcagcgtagagcaccgcttcaaaatgcttcttaactccgaccgagccgagcac
cagctcatgcccaaggaatacgatttggagatgggcaaggagcttgcgcgcagcacgttc
gtcttcaccgaagaggacctgcccggcttcaaggcgaagtcgaaggcgagaaccgatgcg
gcaaatgctggtattccggcccggttcctgcggcccaaggccgacaaagtggaaaagaaa
ccgtttgagaagggtcgtcgttggcagccctactaccgcaaggcaattcccaagaagacg
aagatcgccgcgcggatccaatacgagctagcttgcaagcctgtcgacaatgccgagagt
caagcaattctgcagcggaagcaagttgaggcccagcggccgaagcatacacttcagatt
atggagcagcgcgcagccaacagcattatccaccatgggtctgctgccgccgtggagaag
tttggctctttcattaaaacgtctgcgcccacaaaggccacgaagcccaaaaaggccgag
aacagagctgcccgtatgtcggaggaacagcttctcgatggcctcatggaggctttcagg
aggtacgagtactggaaaatgtccattctcaaggccagattcgatcagccagaggctttc
ttgcgccagactttggagaagatcgcagttctcaaccgatccggcattcacgccaacgag
tggtcgctacaggaacacctcaagagtatggcctccggcgcgaccagcgagaccgcccca
gaggaggctgccgccgacgacgacgatgacgacgaagtggttatggaggacgttgtgtaa
DBGET
integrated database retrieval system
