Colletotrichum higginsianum: CH63R_03697
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Entry
CH63R_03697 CDS
T08176
Name
(RefSeq) DEAD/DEAH box helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03013
Nucleocytoplasmic transport
chig03015
mRNA surveillance pathway
chig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CH63R_03697
09122 Translation
03013 Nucleocytoplasmic transport
CH63R_03697
03015 mRNA surveillance pathway
CH63R_03697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_03697
03041 Spliceosome [BR:
chig03041
]
CH63R_03697
03009 Ribosome biogenesis [BR:
chig03009
]
CH63R_03697
03012 Translation factors [BR:
chig03012
]
CH63R_03697
Enzymes [BR:
chig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH63R_03697
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CH63R_03697
mRNA cycle factors
Stress granule specific factors
CH63R_03697
Spliceosome [BR:
chig03041
]
Complex C
Other components
EJC/TREX
CH63R_03697
Ribosome biogenesis [BR:
chig03009
]
Eukaryotic type
90S particles
Helicases
CH63R_03697
Translation factors [BR:
chig03012
]
Eukaryotic type
Initiation factors
eIF-4
CH63R_03697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
COG4_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
28862779
NCBI-ProteinID:
XP_018159918
UniProt:
A0A1B7YGW6
LinkDB
All DBs
Position
3:complement(496631..497982)
Genome browser
AA seq
412 aa
AA seq
DB search
MAEGSGIDRKAEERMEFSTSKEVTVHPTFESMSLKENLLRGIYAYGYESPSAVQSRAIVQ
VCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGD
YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE
LLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGL
KQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDM
PQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRF
GRKGVAINFVTSEDVRILRDIECEYLPESEAETVYYSTQIDEMPMNVADLIS
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggtagcggaatcgaccgtaaggctgaggagaggatggagttctccacctct
aaggaagtgacggttcacccgaccttcgagtcgatgtctctcaaggaaaatctcttgcgc
ggcatctacgcttatggctacgaatccccttcggccgtccagtcccgcgccatcgtccag
gtctgcaagggccgcgacaccattgcccaggcccagtccggtacgggtaagacggcgacc
ttctcgatcagcatgctccaggttatcgacacggcggtgcgcgagacccaggctctcgtc
ctctccccgacccgcgaacttgcgacccagatccagtccgtcgtcatggccctcggcgac
tacatgaacgtccaatgtcacgcctgcattggaggcaccaacgttggcgaggacatccgc
aagcttgactacggccagcacatcgtctcgggaactccgggacgtgtcgccgacatgatc
cgccgccgtcacttgcgcacgcgccacatcaagatgctcgtcctcgatgaggccgacgag
ctcctcaaccgcggattccgtgagcagatctacgacgtttaccgatacctgccgcccgcg
acgcaggtcgtcgttgtcagtgctacgctgccgtacgacgtgctcgacatgacgaccaag
ttcatgacggaccccgtgcgcatcctcgtcaagcgtgacgaactgacgctcgagggactc
aagcaatactttatcgccgtcgagaaggaggactggaagttcgataccctgtgcgatctc
tacgacaccctgaccatcacgcaggccgtcatcttctgcaacacgcggaggaaggtcgac
tggctgacggacaagatgcgcgaggccaacttcaccgtcagcagcatgcacggcgacatg
ccgcagaaggagcgtgacagcattatgcaggatttccgccagggcaacagccgtgtgctc
atctcgaccgatgtgtgggcgcgcggtatcgatgtgcagcaggtcagtctggtcatcaac
tacgacctgccgagcaaccgtgaaaactatatccaccgcatcggccgaagcggtcgcttt
ggacgcaagggtgtcgccatcaacttcgttaccagcgaggatgtccgtatcttgcgcgac
attgagtgtgagtatcttcccgaatccgaagccgagactgtatactactcgacccagatc
gatgagatgcccatgaacgtggccgatctcatctcttaa
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