Colletotrichum higginsianum: CH63R_03700
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Entry
CH63R_03700 CDS
T08176
Name
(RefSeq) Structure-specific endonuclease subunit SLX1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
CH63R_03700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_03700
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
CH63R_03700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
zf-HC5HC2H
zf-HC5HC2H_2
zf-C2HC
T5orf172
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
28862782
NCBI-ProteinID:
XP_018159921
UniProt:
H1UUS9
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All DBs
Position
3:507015..508136
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AA seq
307 aa
AA seq
DB search
MPVQSKPIPALYTVYVLRSTVRHASLYIGSTPNPPRRLKQHNGEARGGAARTSRMSLRPW
EMVGLVSGFPGMVAALKFEWALNNPHLSLHIPSASRITVSNGVKKNGHPRRPRMSLPSIL
SNLQLLLSVPSFRRWPLTLHFFAKDVYKAWLSSSADSTEPIPNTLGVVTDFGPDPTASSS
DGAAWGIHALPLDYVPIKAYVEKGQSITAFEREGNCVVCKDALPHAQGLLAICPNEGCEG
VGHLSCWSRHLLRNECDQQAVVPVQGRCPQCAGHVRWVDMMKELTLRERGAKVVETLLKK
KKRRTKT
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtccagtccaaacccatacccgccctctacacggtgtacgtcctccgttccacg
gtgcgccacgcgtctctctacatcggctcgacaccaaaccccccgcgccgtctgaagcag
cacaatggcgaggctcgcggcggcgctgctcgcacctcccgcatgagcctgcggccctgg
gagatggttggccttgtgtccggcttcccgggcatggttgctgccctgaagtttgagtgg
gcgctaaacaacccgcatctctccctgcacataccctccgcgtcgcggattaccgtctcg
aacggcgtgaagaagaatggtcatcctcgtcggcctcgaatgagcctgccttccatcctg
tccaacctgcagttattgctgagcgtaccgagtttccgccgttggccgctgacattgcac
ttcttcgcaaaggatgtgtacaaagcctggctttcgtcgtctgccgactcgaccgagcct
attccaaacactcttggtgtggtcaccgacttcggccctgaccccaccgcgtcttcatca
gacggcgccgcttggggcatccatgccttgcctctggactacgtaccaatcaaggcgtac
gtcgaaaagggacagtccatcacagcctttgagagagagggcaactgtgttgtgtgcaaa
gatgcgctccctcacgctcagggactgctggcgatatgccccaacgaaggctgcgaaggc
gtcggccatctttcatgctggagtcgtcatctgctccgcaacgagtgcgaccaacaagcc
gtggttcctgttcagggtcgttgcccccagtgtgcgggtcatgttcggtgggtcgatatg
atgaaagaactgacgctgcgggaaaggggagccaaagtggttgagacccttctcaagaag
aagaagaggcgaaccaagacttga
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