Colletotrichum higginsianum: CH63R_04028
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Entry
CH63R_04028 CDS
T08176
Name
(RefSeq) DNA polymerase alpha/epsilon subunit B
KO
K02328
DNA polymerase delta subunit 2
Organism
chig
Colletotrichum higginsianum
Pathway
chig03030
DNA replication
chig03410
Base excision repair
chig03420
Nucleotide excision repair
chig03430
Mismatch repair
chig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH63R_04028
03410 Base excision repair
CH63R_04028
03420 Nucleotide excision repair
CH63R_04028
03430 Mismatch repair
CH63R_04028
03440 Homologous recombination
CH63R_04028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chig03032
]
CH63R_04028
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_04028
DNA replication proteins [BR:
chig03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
CH63R_04028
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
CH63R_04028
MMR (mismatch excision repair)
DNA polymerase delta complex
CH63R_04028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_E_B
DNA_pol_D_N
DUF5888
Motif
Other DBs
NCBI-GeneID:
28863110
NCBI-ProteinID:
XP_018160249
UniProt:
H1VKH4
LinkDB
All DBs
Position
3:1543224..1545015
Genome browser
AA seq
504 aa
AA seq
DB search
MVTLEEATALLQKPADAAAASSTLSRDPSRYKPLNSFALPKERSYQQQYADIYFLRLTSI
RPAVDAAAAEAWDGTIIGGEEAKHVNRVLDVRQGELCWVTGTVYIDMALKPNILEDVSKD
RWISAPISTDRYYSNEDDKDMIMLEDDSGRIRLVGDVLKSIHLVTGTIIGVLGSENANGE
LEVIDVKFPDLAPQPSRWTLTDSPSEDHNMSGTSTPSQRPSSKIAIVSGLSFSGGDASYA
LELTLLLEFLLGEALTPATQSSELAHVSRLIIAGNSIDSSTPTPTTTNPASKTSTNKKYG
YDASAYNPLPSQLLDDFLADLLPSIPVTLIPGAEDPANASYPQQPIHPAMFPRSRPYCAA
PGAKETGWLDTTTNPWEAEVDGWRVLGTGGQNVDDVFKYVDSDDRLGMMEAMCRWRCSAP
TAPDTLWAYPFQDDDPFVMKEAPHLYFVGCQPEFSTKVIQGDNGQQVRLITVPSFAESKE
LVLVDTETLEVSKVKIMAATATAS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggtaactctcgaagaagccaccgcgcttctccaaaagccggccgatgccgccgccgcc
tcatcgacactcagtcgagatccctcccgctacaaacctctcaacagtttcgccctgccc
aaggagcgctcataccaacagcagtatgccgacatttacttcctgcgtctcacctctatt
cggcccgccgttgacgccgccgctgccgaggcctgggacggcaccatcattggcggggag
gaggccaagcacgtcaaccgtgttcttgacgtccgtcagggcgagctctgttgggtgaca
ggcaccgtctatattgacatggctctgaagccgaacatcctcgaggacgtttccaaggat
cgctggatctcagctcccatatctacggaccgctactactcgaatgaggacgacaaggac
atgataatgctcgaggatgactcgggtcgcatccgccttgttggcgacgtcctcaagtcc
atccacctcgtcactggcacaatcatcggcgttctgggatccgagaacgcaaacggtgag
ctcgaggtcatcgacgtcaagtttccggacctcgccccgcagccttcccgctggaccctt
accgacagcccttccgaagaccacaacatgtccggcacctctaccccgtcccaacgaccc
tcgtccaaaatcgccattgtctcgggcctctccttctcgggcggcgacgcatcctatgct
ctcgagctcaccctccttcttgaattcctcctcggcgaggccctcacccctgcaacccag
tcctcagagctcgcccacgtgtcccgcctcatcatcgcgggaaactccatcgactcctct
accccaacacccaccaccacgaacccggcctccaagacgtcgaccaacaagaaatacggc
tacgacgccagcgcctacaacccgctccccagccagctcttggacgacttcctcgccgac
ctgctcccctccatccccgtcacccttatccccggcgccgaggaccccgccaacgcgagt
tatccacagcagcccatccatccggccatgttcccgcgctcgagaccttactgcgctgcg
cccggcgccaaggagaccggttggctcgacaccacgacgaacccctgggaggccgaagtg
gacgggtggagggtcctcggcaccggcggccagaatgtcgacgacgtgtttaagtacgtt
gacagtgacgaccggctgggcatgatggaggccatgtgcaggtggcgttgcagcgcacct
accgcccccgacacactttgggcctaccccttccaagatgacgatcccttcgtcatgaag
gaagccccccacctctacttcgtcgggtgccagcctgagttctcgacaaaagtcattcag
ggcgacaacggccagcaggtccggctcatcaccgtgccatcttttgcagagagcaaggag
ctggttctggtagacacggaaacattggaggtttccaaggtcaaaatcatggcggcaact
gcgacagcgtcatga
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